Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6919g00005 ATGGATAAGGATGAATGCGCTTTGAACAGCAATCCATGCATCCACAAGAAAACCTGCAAAAACGCCCCTGGAGAAGGTTTGAAGTGCTCATGTCCAAAGGGCCACGAAGGAGATGGATTGAGAAATGGCCAAGGCTGCAGACCCAAAAGAGACAAAAACACAGGGAATCTTATTCTTATAATTGGATTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCCTAAACATATACCCCCAATTCCGTGAAAGAAAGCTCATGAAAATCAGAGAGAACTATTTTAAGAAAAATGGTGGCATGTTATTGCAAAGGCAGATTGATCTGGTCAATGGCTCAACCGAAAGAGCCACAATTTTCACTGCCGAGGAGCTCAAGAAAGCCACCGACAACTACGATGATGATAGAATCATAGGCAAAGGAGGACATGGAACGGTGTACAAAGGTATATTATCAAATGGCAGTGTTGTTGCCATCAAGAAGGCCATGGTTTCCAACCAAACCGAGATTGGCCAATTCATCAACGAAGTGGTCGTGCTTTCCCAAATCAACCATAGGAATGTCGTCAAACTACTAGGTTGCTGTCTGGAGACTGAGTTTCCTTTGCTTGTTTATGAGTTCATCACCAACGGTACCCTTTGTGAGCATCTACATTTAGAAGGTGAGGCATGTGGTGATAAACACAAACTTTCATGGACAACACGTTTGAGAATTGCAGCAGAGACAGCAGAATCTCTTGCATACTTGCATTCTTCTGTTTCCACACCCATCATACATAGAGATGTTAAAACAGCAAATATACTTCTAGATGACAACCTCACGGCCAAAGTTTCTGACTTTGGTGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAGTTAACAACGTTGGTGCAAGGAACCATGGGTTACCTTGATCCTGAGTACTTCCAAACAAGCCAACTAACCGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTTCTTGCAGAACTATTGACAAGTAAGAAGGCACTTTCGTTCCTTAGGCCTCAGAGTCATAGGAATTTGTCCATGTATTTTGTTTCTGCAATGAATGAGGGTCGGTTGGATCAAATATTGGACAAGGAAATCGTGAGTGATGCAAGTGTTGAGTATGTGATAGAAGTTGCTAATCTAGCCAAAAGGTGTCTTAGGTTGCATGGAGAAGAAAGACCAAGCATGAAAGAAGTTGCTATGGAGTTGGAGGGAATAAGGATCATTGAAAAACATTCACTGGGAGGAGCAAAAGATGTTGCATCTCAGGAAGAGACAGAGAGCTTTCTCAGACCACGTTCTCATTTAAGTATTGATCATGGTGATGGTACTATAGCAGTACAATTTCTAGGTTGCATAACCAGATTTTGGAACCACTTGAAGATGGACGATGAACAACAAACGCAGATCGGGATAAGTTGTAAGATTTCAGATTCACTTAGTTGTAACCATACAGTCAATCAAATTAAAGATTAA 1488 0.416 MDKDECALNSNPCIHKKTCKNAPGEGLKCSCPKGHEGDGLRNGQGCRPKRDKNTGNLILIIGLSLSLSLLAVVVGCLNIYPQFRERKLMKIRENYFKKNGGMLLQRQIDLVNGSTERATIFTAEELKKATDNYDDDRIIGKGGHGTVYKGILSNGSVVAIKKAMVSNQTEIGQFINEVVVLSQINHRNVVKLLGCCLETEFPLLVYEFITNGTLCEHLHLEGEACGDKHKLSWTTRLRIAAETAESLAYLHSSVSTPIIHRDVKTANILLDDNLTAKVSDFGASKLVPLDQTQLTTLVQGTMGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTSKKALSFLRPQSHRNLSMYFVSAMNEGRLDQILDKEIVSDASVEYVIEVANLAKRCLRLHGEERPSMKEVAMELEGIRIIEKHSLGGAKDVASQEETESFLRPRSHLSIDHGDGTIAVQFLGCITRFWNHLKMDDEQQTQIGISCKISDSLSCNHTVNQIKD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6919g00005 495 Gene3D Laminin 2 41 - -
Vium6919g00005 495 Pfam Protein kinase domain 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6919g00005 495 Gene3D Phosphorylase Kinase; domain 1 99 208 - -
Vium6919g00005 495 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Vium6919g00005 495 FunFam Wall-associated receptor kinase 2 209 431 - -
Vium6919g00005 495 FunFam Wall-associated receptor kinase 2 103 208 - -
Vium6919g00005 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium6919g00005 495 CDD STKc_IRAK 139 410 - -
Vium6919g00005 495 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 421 IPR045274 GO:0007166
Vium6919g00005 495 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6919g00005 495 SUPERFAMILY EGF/Laminin 2 48 - -
Vium6919g00005 495 ProSiteProfiles EGF-like domain profile. 2 38 IPR000742 -
Vium6919g00005 495 Gene3D Transferase(Phosphotransferase) domain 1 209 429 - -
Vium6919g00005 495 SUPERFAMILY Protein kinase-like (PK-like) 117 408 IPR011009 -
Vium6919g00005 495 SMART serkin_6 133 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6919g00005 495 CDD EGF_CA 2 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6919g00005 Vium-Chr6919 38264 40438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6919g00005 2 412 Receptor kinase-like Gene Family AT1G21230 52.427 5.45e-140 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium6919g00005 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6919g00005 - - var:108341450 860.907