Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6916g00001 ATGGAAAAACAGCCATTGGAGAAACCAAAACCAAAATACAGAAAAGGGTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAACCATATCCTTAAGCATGGTCATGGATGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGAAATGGAAAAAGTTGCCGACTAAGGTGGATTAACTACCTGAGACCTGGATTGAAGAGAGGAGTTTTCAGCAAACATGAAGAAGATACAATCATGGCTCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCACAGCATTTACCAGGAAGGACTGATAATGAGATAAAGAATTACTGGCATTCATATCTGAAGAAGAAAGTGATGAAAACTAAGGATGAATCTGATAAACAAATTGAGCATGCTAGTTCAAGTTCAGACACAGTGGAAAATTCACTCTCTCCACAGAAACTTGCAACTCAAGATCCAAGTTATGCATTGCTACAAAACATGGAAAAAACAGCAACACACTCTGATAACTTGTTCTCTCAAAGCTGTGACTTTTCCAAAAGGGGTTGTCAGAGTTCCCTCAAAACTCTTATTTCTGAGTGGCTTTCAGAGGATCAAGTTGGTGCAGGCTCAGTGAATTCTGATGATTCTTTGGTATTGGAAATGTATTGATCAAATTCATCTTTCCAAGACGCTATAATGCATTTGTTGGAAGGGAACTTTGGTGAAGAGTATCATATATCTATTTCCAGTTCAACCACTGAGGTAATACAATTCACAGCTTAA 762 0.3898 MEKQPLEKPKPKYRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIMALHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVMKTKEXESDKQIEHASSSSDTVENSLSPQKLATQDPSYALLQNMEKTATHSDNLFSQSCDFSKRGCQSSLXKTLISEWLSEDQVXGAGSVNSDDSLVLEMYXSNSSFQDAIMHLLEGNFGEEYHISXISSSTTEVIQFTA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6916g00001 257 SMART sant 67 115 IPR001005 -
Vium6916g00001 257 SMART sant 14 64 IPR001005 -
Vium6916g00001 257 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vium6916g00001 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vium6916g00001 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium6916g00001 257 CDD SANT 18 62 IPR001005 -
Vium6916g00001 257 CDD SANT 71 113 IPR001005 -
Vium6916g00001 257 Gene3D - 70 142 - -
Vium6916g00001 257 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vium6916g00001 257 FunFam MYB transcription factor 70 141 - -
Vium6916g00001 257 Gene3D - 15 67 - -
Vium6916g00001 257 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium6916g00001 257 PANTHER MYB DOMAIN PROTEIN 55 8 187 - -
Vium6916g00001 257 MobiDBLite consensus disorder prediction 123 146 - -
Vium6916g00001 257 FunFam MYB transcription factor 12 68 - -
Vium6916g00001 257 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium6916g00001 257 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6916g00001 Vium-Chr6916 22720 25625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6916g00001 8 128 MYB Transcription Factor Family AT3G48920 70.248 7.88e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium6916g00001 Myb_DNA-binding 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6916g00001 K09422 - gmx:100803537 417.927