Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6910g00009 ATGACGGACCTTCATCAATTCAATAACATCACTCTTGGAGGCCGTGGAGGCACCAATCCAGGACAGATGAAATTACACTCTGGTGGAATAGTATGGAAGAGACAGGGCGGTGGTAAATTAATTGAAGTTGATAAATCTGATATAGAGGGGGTAACATGGATGAAGGTTCCAAAGACTAACCAACTTGGTGTTCAAATTAAAGATGGGTTGTACTACAAGTTCACTGGATTTCGTGATCAGGATGTTGTAAGTTTGACCAATTTTTTCCAGAGCACTTGTGGAATAACAGTGCGCGAGAAGCAGCTTTCTGTTAGCGGAAGAAATTGGGGAGAAGTTGATCTGAATGGAAATATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCGCTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAGTTCCAACACCCAGTTTGTTGGCGATGAAAAAACTCCTCCTGCTGAAGTTTTCCGCAGCAGAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGAGTATTGCGATCCTTACACTAAGAGGACGATACATTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAATCTGATTATGTTGTCCAAAGTGAATTGGCAATGAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTAGAGCTGTCTTACAAGGGCCTTATTCATGAAGTATTCACTACAATATTACGTGGGTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAGGATGGTTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCGACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTCGAGAGGCATGCTGCCGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATCCAGAGAAATGAGTACCATAATTTGTATGAATTTATTAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGGCCAACCTACTGCTGGTATAAAGAAGGTTCTGGAGAATGACGATGATGATGCTGTTGATCCACATCTTGAGCGAATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGGAGATGATTCTGATGCCAGTAAAAGTGGCGAGGAGAAAGAGAAGCCAGCCAAGAAGGAAATAAAGAAGGACCTGCCACCTAAGGCATCTACTTCTAAAAAGAAACCAAAAGATGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTCAAGAAAACAAACCCCGGAATCTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAAATGTCAGCGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAACAACGTTACAAGGATGAAATTAGCGGCTACAAGAAAACCCAACCCATGAATATTGATTCAGCAAATGTAACTGACAGTGCCTAA 1923 0.4061 MTDLHQFNNITLGGRGGTNPGQMKLHSGGIVWKRQGGGKLIEVDKSDIEGVTWMKVPKTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFQSTCGITVREKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFESIAILTLRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFESDYVVQSELAMNEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDGQPTAGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGGDDSDASKSGEEKEKPAKKEIKKDLPPKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKAREDKQRYKDEISGYKKTQPMNIDSANVTDSA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6910g00009 640 Gene3D High mobility group box domain 539 634 IPR036910 -
Vium6910g00009 640 FunFam FACT complex subunit SSRP1 96 179 - -
Vium6910g00009 640 Gene3D - 199 338 - -
Vium6910g00009 640 CDD HMG-box_AtSSRP1 553 627 - -
Vium6910g00009 640 MobiDBLite consensus disorder prediction 597 622 - -
Vium6910g00009 640 FunFam FACT complex subunit SSRP1 1 93 - -
Vium6910g00009 640 Gene3D - 95 179 IPR038167 -
Vium6910g00009 640 MobiDBLite consensus disorder prediction 469 564 - -
Vium6910g00009 640 Coils Coil 606 626 - -
Vium6910g00009 640 SMART hmgende2 555 625 IPR009071 -
Vium6910g00009 640 MobiDBLite consensus disorder prediction 501 547 - -
Vium6910g00009 640 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Vium6910g00009 640 FunFam Fact complex subunit ssrp1 199 338 - -
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Vium6910g00009 640 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Vium6910g00009 640 SUPERFAMILY HMG-box 543 626 IPR036910 -
Vium6910g00009 640 FunFam FACT complex subunit SSRP1 540 633 - -
Vium6910g00009 640 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Vium6910g00009 640 Gene3D - 339 447 IPR011993 -
Vium6910g00009 640 Pfam POB3-like N-terminal PH domain 6 97 IPR035417 -
Vium6910g00009 640 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 609 - -
Vium6910g00009 640 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Vium6910g00009 640 SUPERFAMILY PH domain-like 206 440 - -
Vium6910g00009 640 MobiDBLite consensus disorder prediction 597 640 - -
Vium6910g00009 640 MobiDBLite consensus disorder prediction 626 640 - -
Vium6910g00009 640 CDD PH2_SSRP1-like 342 441 - -
Vium6910g00009 640 SMART Rtt106_2 348 441 IPR013719 -
Vium6910g00009 640 Gene3D - 1 92 IPR011993 -
Vium6910g00009 640 FunFam FACT complex subunit SSRP1 339 447 - -
Vium6910g00009 640 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6910g00009 Vium-Chr6910 90096 96504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6910g00009 552 625 ARID Transcription Factor Family AT1G04880 40.541 2.61e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium6910g00009 POB3_N 9.7e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6910g00009 K09272 - gmx:100805034 1107.43