Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6910g00008 ATGGCTCAGAAGGCGGAGAAAAACGACACCGACTTCAAGGTCCCGGAACCAATCACGCCCTGCGCCACCACAACCGCCGCCGCTGCAACTTCGATTTCCGAGCCTTCTAGATTCTTCGACGCTGTCGCTCCGGCCACGTCGTCGCGTTCGCCCAAGCGCTCGCTTCCGCAGGAGGACGCTGCGAGCGCGGACCGGACGGCGGCATCGGAGCCGAAGCGCGCGGTGAACAGGTGCTCGGGATGCCGGCGGCGCGTCGGGCTGACCGGATTTCGTTGTCGGTGCGGTGACCTCTTTTGCGCTGAGCACCGGTACACCGATCGCCACGACTGCTCCTACGACTACAAGGCAGCCGGGAGAGAGGTCATCGCGAGGGAGAATCCCGTCGTGAAGGCCGCGAAGATCGTGAAGGTCTGA 414 0.6449 MAQKAEKNDTDFKVPEPITPCATTTAAAATSISEPSRFFDAVAPATSSRSPKRSLPQEDAASADRTAASEPKRAVNRCSGCRRRVGLTGFRCRCGDLFCAEHRYTDRHDCSYDYKAAGREVIARENPVVKAAKIVKV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6910g00008 137 MobiDBLite consensus disorder prediction 40 74 - -
Vium6910g00008 137 Pfam AN1-like Zinc finger 78 115 IPR000058 GO:0008270
Vium6910g00008 137 FunFam Zinc finger AN1-type containing 6 52 133 - -
Vium6910g00008 137 ProSiteProfiles Zinc finger AN1-type profile. 72 118 IPR000058 GO:0008270
Vium6910g00008 137 Gene3D - 46 133 IPR035896 -
Vium6910g00008 137 SUPERFAMILY AN1-like Zinc finger 65 131 IPR035896 -
Vium6910g00008 137 SMART AN1_Zf_4 78 115 IPR000058 GO:0008270
Vium6910g00008 137 PANTHER AN1-TYPE ZINC FINGER PROTEIN 40 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6910g00008 Vium-Chr6910 87414 88280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6910g00008 50 137 C2H2 Transcription Factor Family AT3G52800 52.273 1.85e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6910g00008 - - gmx:100794830 220.705