Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6910g00005 ATGAGCATTGTGTATAGCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGACATGGATTCAAACATCGGTCAACATTGTCACCAGCAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAATCTTGTGAATAATAACAACAACAACGTCAACAACAATATCAACAACAACAACATTGGATGTGTCAATGATGAAACTTTCAGAAGTGACTGTAATAACCATCATCAGCAGCAGCAGAGCTATCATCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCTGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCTTCACCTCAGATGATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACACAATGAGAGAGGTGGGAAGTTTTAGGGACTGTGATGTACCAAATGGGCAAGCTATTGCATCCGGTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGATATCATCATCTTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAACCAAATTGTGTTGAAAGCAGAAACCTGAGGAATGACAGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAATAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGACTACCATGGAGAAGTTATATCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCGGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTTCAAGTAACCAGAAGCAATAA 1326 0.4238 MSIVYSHAVKYSQEVTRMNTDMDSNIGQHCHQQNSGLMRYRSAPSSLLTNLVNNNNNNVNNNINNNNIGCVNDETFRSDCNNHHQQQQSYHPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSGYSFGSSPQMMYQTQQVQGFSMPNGSLRPAGNGFDGSFSAVNSMASQNSTQTKMVASTNCSNLIRQKSSPAGFFSNYSVDNTMREVGSFRDCDVPNGQAIASGSGLHGTLNFSSRISSSSCSTRMPQIAENGNEVVEPNCVESRNLRNDSGNTKCYMPSFTSDFWDGSAISASRTATNNCEISFSTSNAMDIQNADFGYQKLGLTHHLSLPSSSTRMTTMEKLYQTQGTVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLADTRAKCTCSSNQKQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6910g00005 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 436 - -
Vium6910g00005 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 431 IPR036638 GO:0046983
Vium6910g00005 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Vium6910g00005 441 MobiDBLite consensus disorder prediction 111 131 - -
Vium6910g00005 441 Gene3D - 371 440 IPR036638 GO:0046983
Vium6910g00005 441 SMART finulus 375 425 IPR011598 GO:0046983
Vium6910g00005 441 Pfam Helix-loop-helix DNA-binding domain 375 420 IPR011598 GO:0046983
Vium6910g00005 441 FunFam Transcription factor bHLH130 family 370 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6910g00005 Vium-Chr6910 31439 34892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6910g00005 28 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.333 8.94e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6910g00005 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6910g00005 - - gmx:100795896 664.455