Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6902g00004 ATGGCGACGCCGCTGACGGGGCTTCAGCACATGGACGGCGGCGGCGGAGTGGCGGTGCTGTCGAATCCGGTGAGTAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGTTTCGGCCTGTCGCTGTCGGAATCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTCGACGCGCTGCACCGGTTAGCGATGGCGTTCGCCACCGGAAATTGCTCAGACATCCAGCCCCTCTTCCAACGCTATTTTTTCCTCAGATCGATGTACAGACACCACTCCAATGCTGAAGATGAGGTGATTTTCCCAGCTCTAGATATACGGGTAAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGAAATTTTTGAACATCTGTTTGAGCTCTTAAACTCTTCCGTCCATAATGTTGAAAGTTTTCCAAAGGAATTAGCTTCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCCCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGTAGTATTCCTGTGAATATGATGACTAAATTTCTTCCGTGGCTCTCAACATCTATATCACCCGATGAACCTCAGGATTTGAGGAAGTGCTTAAGCAAGATAGTTCCAGAGGAAAAACTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTCGTGGTAACGCAGTTGAAAATTGTGTAGATCATTCTCAGGTGCGGTGTAGTAGTAATCCTGTTAGCCATCAGAATGGAAAAATAAAATGTGCATGTGAGTCCACAACAACTGGGAAAAGGAAATATTCTACATGTTTCACAGATGTTTCTGATACCATCACAACACATCCTATAGATGAAATATTGTTTTGGCATAATGCGATAAAAAAAGAGTTAAATGAGATAGCAGTACAGACCAGAAAGATACAACACTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATCGCTGAAGTTTGCATATTTCACAGTATTGCTGAAGACAAGGTTATTTTTCCAGCAGTAGATGGAAAATTTTCTTTCCGTAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGTTCTTTAATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATACTGGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCATTAAAGTTGATTGAGCGTGTCCTTCCATGGTTGACTAGTTCATTAACTGAAGATGAAGCACAAATGTTTTTGAAAAACATGCAATTGGCAGCTCCAACAATAGATTCTGCTTTAGTCACACTGTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCTTCTAGTGTGTCAGGCTGCTGTCCAGCCCAGAGAATTACTGATATTGAAGAAAATATTGTTCAATCTTCCTGTCCTGCTTCTGCATTGTCTGGTAGAGATTGCTCATTATTAGCTGAATCAGATGGGACCCAACAAAGACCAGTCGAGCAAAACCTACTGGAGGTGCATAATGAAGATGTCTCTGAAGTTTCAGAAAGTGGAAGTATTCAGAAACGATGTTGCAGTTCGCAGTCTTGTTGTGTGCCAGCATTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTTCACTCACTACAACCAAGTCCTTACGCTCTTTGTCTTTCACTGCTTCTGCTCCGTCCATTAATTCTAGTCTTTTCATATGGGAAACTGACAACAGCTCATGTGATGTTGGCTCTACAGAAAGACCAATAGATACCATATTTAAATTTCATAAAGCCATACGCAAAGACTTGGAGTATTTGGACATTGAATCTGGAAAGCTTTGTGATTGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCTGCACTTGAATCCAAAGAAGCACTTCATAACGTGAGCCATTCCTACACACTGGATCATAAGCAGGAGGAAAAATTATTTGAAGACATTTCCCGTGTTCTTTCTGAACTTTCCGTCCTTCATGAAGTCTTGCAGAGGACCCATATGCCAGCAGATTTAAGTGAAAATAGTTTTGGAATTCCTGATGCCAAGGATATGGATAATGTGAAAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTAACCCTAGATCAACATATTTTTAGAGAAGAGCTTGAGCTTTGGCCACTGTTTGGTAAACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGGATAATTGGCACTACAGGTGCTGAGGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACAGAGGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACCAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAACACAGGCAGAAGCTTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTACCAAGAAAGCTTGAACCTGAATGACCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCAGGATGAATCAGAATGAACTTGAGTCAGAAATACGGAAGGTCTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTATCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCCGCCCAACAAAAGTTACCCAAGGCTCCATCTGGGGAATCGTCCAGTAAACAAATAGAAGGATGCTCACCATCTTTTCGGGACCCAGAGAAACATATATTTGGTTGTGAGCATTATAAGCGAAATTGCAAGCTTCGAGCTTCTTGTTGCGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCAAGCGATCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGCATGCAGTGCCTAACTATACAGCCTGTTGGGTCTGTATGTATATCTCCTTCATGTAATGGACTTACAATGGCAAAGTACTATTGCAACATTTGCAAATTCTTCGATGACGAAAGGAATGTTTATCACTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGAATTGATTATTTTCATTGTATGAAGTGCAATTGTTGCCTGGGGATAAAATCTGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGTCCAATTTGCTGTGACGACTTGTTCACATCAAGCGCAACAGTGAGAGCTTTACCGTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGCCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGATATACTCTGCCATGACTGTGACCGAAAGGGCACTTCACGCTTCCACTGGCTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAACAAACTCTAGCTGCCATTAG 3726 0.4232 MATPLTGLQHMDGGGGVAVLSNPVSKVDSSANGGGGFGLSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYFFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFELLNSSVHNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTKFLPWLSTSISPDEPQDLRKCLSKIVPEEKLLQKVVFTWMEGRSRGNAVENCVDHSQVRCSSNPVSHQNGKIKCACESTTTGKRKYSTCFTDVSDTITTHPIDEILFWHNAIKKELNEIAVQTRKIQHSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFRKEHAEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTEDEAQMFLKNMQLAAPTIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRITDIEENIVQSSCPASALSGRDCSLLAESDGTQQRPVEQNLLEVHNEDVSEVSESGSIQKRCCSSQSCCVPALGVSRNNLGLGSLTTTKSLRSLSFTASAPSINSSLFIWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDCDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISRVLSELSVLHEVLQRTHMPADLSENSFGIPDAKDMDNVKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQSKMMDTWKQATKNTMFNEWLNECLKESPVSTTQAEASERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDPEKHIFGCEHYKRNCKLRASCCGKLFTCRFCHDNASDHSMDRKATMEMMCMQCLTIQPVGSVCISPSCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGSCGSYNTRVIKSEATNSSCH 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6902g00004 1241 Gene3D nmb1532 protein domain like 304 452 - -
Vium6902g00004 1241 Gene3D nmb1532 protein domain like 44 194 - -
Vium6902g00004 1241 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Vium6902g00004 1241 Pfam Hemerythrin HHE cation binding domain 650 813 IPR012312 -
Vium6902g00004 1241 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Vium6902g00004 1241 CDD Hr-like 305 434 - -
Vium6902g00004 1241 CDD RING-H2_Pirh2-like 1124 1167 - -
Vium6902g00004 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1120 1169 IPR013083 -
Vium6902g00004 1241 MobiDBLite consensus disorder prediction 882 904 - -
Vium6902g00004 1241 Pfam Zinc-ribbon 1172 1229 IPR039512 -
Vium6902g00004 1241 SUPERFAMILY Zinc hairpin stack 1062 1118 IPR037275 -
Vium6902g00004 1241 Gene3D nmb1532 protein domain like 646 889 - -
Vium6902g00004 1241 SUPERFAMILY RING/U-box 1122 1177 - -
Vium6902g00004 1241 SUPERFAMILY CHY zinc finger-like 989 1053 IPR037274 GO:0008270
Vium6902g00004 1241 FunFam Zinc finger protein-related isoform 1 1120 1169 - -
Vium6902g00004 1241 ProSiteProfiles Zinc finger RING-type profile. 1125 1167 IPR001841 -
Vium6902g00004 1241 SMART ring_2 1125 1166 IPR001841 -
Vium6902g00004 1241 Pfam Ring finger domain 1124 1166 IPR001841 -
Vium6902g00004 1241 Gene3D - 1196 1238 - -
Vium6902g00004 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 693 1238 - -
Vium6902g00004 1241 CDD Hr-like 48 174 - -
Vium6902g00004 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1124 IPR017921 -
Vium6902g00004 1241 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270
Vium6902g00004 1241 CDD Hr-like 652 812 - -
Vium6902g00004 1241 Pfam CHY zinc finger 996 1071 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6902g00004 Vium-Chr6902 10891 21109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6902g00004 1 1240 C2H2 Transcription Factor Family AT3G18290 65.556 0.0 1683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6902g00004 K16276 - gmx:100791354 2319.66