Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium689g00001 ATGGGTGACAACATCAACATTGGCAAAGTCTTAGACAGAGAAGGCTTTAAGTACAACTTCACATGTTCAACTTCAACTGCAACTGCAAGTGACACCTCTGCACAAGATGGGGTCATCAAGGAGCAGGATCGGTTGCTTCCAATAGCTAATGTGGGAAGAATCATGAAGCAAACTCTTCCCCCCAATGCCAAGATCTCAAAAGAAGCAAAAGAAACCATGCAGGAATGTGTGTCTGAGTTCATCAGCTTTGTCACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAAACCGTCAATGGTGACGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAGAAGGTACTTGCATAAGTATAGGGAGTTGGAGGGGGAGAGAGCAACCCAAAATAAGAGTAACACTTACGAAAACAACATTGCAAACATATAA 456 0.4452 MGDNINIGKVLDREGFKYNFTCSTSTATASDTSAQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLHKYRELEGERATQNKSNTYENNIANI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium689g00001 151 Gene3D Histone, subunit A 33 150 IPR009072 GO:0046982
Vium689g00001 151 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Vium689g00001 151 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Vium689g00001 151 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Vium689g00001 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Vium689g00001 151 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium689g00001 151 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium689g00001 151 SUPERFAMILY Histone-fold 42 141 IPR009072 GO:0046982
Vium689g00001 151 FunFam Nuclear transcription factor Y subunit B-3 34 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium689g00001 Vium-Chr689 16817 17703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium689g00001 18 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.424 7.77e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium689g00001 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium689g00001 K08065 - gmx:100817274 263.462