Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6899g00003 ATGAATGGGCAGAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTATTGATAAGGAGAAGGTTCTCAAGTATATGCAAGCTGAGCAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTATATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGCTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGGATTTAAAAGAGAAATAAGGTTCACATCAAAATGCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGTTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTTCAAGTCATTCACAGATGAAGCTTAA 1131 0.4005 MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKIIDKEKVLKYMQAEQIQREIATMKLIKHPNVVQLYEVMGSKTKIYIILEFVTGGELFHKILNSGRISEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDAFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAGEFTCPPWLSFSARKLITRILNPNPVTRITISEIMHDEWFKKEYKLPVFEETKERNTDDIETIFKDCEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQGFKREIRFTSKCSANEIINKIEEVAKPLGFDVQKKNFKSFTDEA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6899g00003 376 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00003 376 CDD CIPK_C 311 368 - -
Vium6899g00003 376 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00003 376 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vium6899g00003 376 CDD STKc_SnRK3 12 267 - -
Vium6899g00003 376 FunFam Non-specific serine/threonine protein kinase 6 308 - -
Vium6899g00003 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium6899g00003 376 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vium6899g00003 376 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Vium6899g00003 376 Gene3D Transferase(Phosphotransferase) domain 1 93 276 - -
Vium6899g00003 376 Pfam NAF domain 307 366 IPR004041 GO:0007165
Vium6899g00003 376 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 366 - -
Vium6899g00003 376 Gene3D Kinase associated domain 1, KA1 304 375 - -
Vium6899g00003 376 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Vium6899g00003 376 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vium6899g00003 376 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6899g00003 Vium-Chr6899 6002 21623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6899g00003 4 370 CBL-interacting serine-threonine protein kinases AT2G26980 79.620 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6899g00003 Pkinase 5.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6899g00003 - - qsu:112026068 637.491