Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6899g00002 ATGAATGGGCAGAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTATTGATAAGGAGAAGGTTCTCAAGTATATGCAAGCTGAGCAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTATATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGCTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGGATTTAAAAGAGAAATAAGGTTCACATCAAAATGCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGTTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTCAATGTTGCCACAGAGATATTTCAAGTGGCACCTTCTCTTCACGTGGTTAAGATTAATAAGGCAAAAGGTGATACATTGGAGTTCCTTAAGTTCTACAACAAGCTTTCAACACGCTTGGAGGATGTTGTTTGGAAAACTGAAGATGACATGGACGATGCAAAGTGA 1317 0.4017 MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKIIDKEKVLKYMQAEQIQREIATMKLIKHPNVVQLYEVMGSKTKIYIILEFVTGGELFHKILNSGRISEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDAFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAGEFTCPPWLSFSARKLITRILNPNPVTRITISEIMHDEWFKKEYKLPVFEETKERNTDDIETIFKDCEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQGFKREIRFTSKCSANEIINKIEEVAKPLGFDVQKKNFKMKLKNVKAGRKGNLNVATEIFQVAPSLHVVKINKAKGDTLEFLKFYNKLSTRLEDVVWKTEDDMDDAK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6899g00002 438 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vium6899g00002 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 414 - -
Vium6899g00002 438 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00002 438 Pfam NAF domain 307 366 IPR004041 GO:0007165
Vium6899g00002 438 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Vium6899g00002 438 CDD CIPK_C 311 425 - -
Vium6899g00002 438 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00002 438 Gene3D Transferase(Phosphotransferase) domain 1 93 276 - -
Vium6899g00002 438 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Vium6899g00002 438 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00002 438 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vium6899g00002 438 CDD STKc_SnRK3 12 267 - -
Vium6899g00002 438 FunFam Non-specific serine/threonine protein kinase 304 429 - -
Vium6899g00002 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium6899g00002 438 Gene3D Kinase associated domain 1, KA1 304 429 - -
Vium6899g00002 438 FunFam Non-specific serine/threonine protein kinase 6 308 - -
Vium6899g00002 438 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6899g00002 Vium-Chr6899 5086 21622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6899g00002 4 390 CBL-interacting serine-threonine protein kinases AT2G26980 79.897 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6899g00002 Pkinase 7.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6899g00002 - - qsu:112026068 739.954