Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6899g00001 ATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTATATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGCTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGGATTTAAAAGAGAAATAAGGTTCACATCAAAATGCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGTTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTCAATGTTGCCACAGAGATATTTCAAGTGGCACCTTCTCTTCACGTGGTTAAGATTAATAAGGCAAAAGGTGATACATTGGAGTTCCTTAAGTTCTACAACAAGCTTTCAACACGCTTGGAGGATGTTGTTTGGAAAACTGAAGATGACATGGACGATGCAAAGTGA 1125 0.392 MKLIKHPNVVQLYEVMGSKTKIYIILEFVTGGELFHKILNSGRISEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDAFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAGEFTCPPWLSFSARKLITRILNPNPVTRITISEIMHDEWFKKEYKLPVFEETKERNTDDIETIFKDCEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQGFKREIRFTSKCSANEIINKIEEVAKPLGFDVQKKNFKMKLKNVKAGRKGNLNVATEIFQVAPSLHVVKINKAKGDTLEFLKFYNKLSTRLEDVVWKTEDDMDDAK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6899g00001 374 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00001 374 Gene3D Transferase(Phosphotransferase) domain 1 34 212 - -
Vium6899g00001 374 Pfam Protein kinase domain 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00001 374 CDD CIPK_C 247 361 - -
Vium6899g00001 374 FunFam Non-specific serine/threonine protein kinase 240 365 - -
Vium6899g00001 374 Pfam NAF domain 243 302 IPR004041 GO:0007165
Vium6899g00001 374 FunFam Non-specific serine/threonine protein kinase 1 244 - -
Vium6899g00001 374 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 350 - -
Vium6899g00001 374 ProSiteProfiles NAF domain profile. 241 265 IPR018451 GO:0007165
Vium6899g00001 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Vium6899g00001 374 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6899g00001 374 Gene3D Kinase associated domain 1, KA1 240 365 - -
Vium6899g00001 374 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Vium6899g00001 374 SUPERFAMILY Protein kinase-like (PK-like) 1 216 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6899g00001 Vium-Chr6899 5085 21622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6899g00001 1 326 CBL-interacting serine-threonine protein kinases AT2G26980 78.287 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium6899g00001 Pkinase 2.8e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6899g00001 - - qsu:112026068 633.639