Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6898g00008 ATGAAATGCTGTGATGTGATTTGCAGAGGAGAAGAGGGAATGGCTTACATGTGTGCAGACAGTGGAAACCTTATGGCCATTGCGCAGCAAGTCATCAAGCAGAAGCAGCAGCAAGAACAGCAGCAGCAGAAACAGCACCAGCAGCACCACCAACATCATCATCATCATCACCATCACCACCATCACCAACACCATCTCAACCCTCTCTCCTTACATCCAATTCCATGGAACAACACTCCCACTCTCGGCTACCCTCTCCATCCCACCGACTTCCCCGACCCCTTCCAACCCGATCCCCCATTCCACTTCCCGGACACGCAATCCGCACCCGCACCGGCCAACTTCCGCTTCTCCGATTTCGACTCCGACGACTGGATGGACTCTCTCATCGCCGCCGCCGACACCCCCTCCTGGCACACCAATGCCGATTTCCCCTTCCCCTCCGATCTCAACCGACTCATCTTCCCCTCCTCCGACACTACCGCCGCCGCTACATCGCTCCCGCTCCAACCAACACCTCCCCCGCCGCCGCAGGAACCAGTCAACGCCGGCCTCTCCTCCGAACCCGAGTCCGCTCACCCGCTCCTCAAAGCCCTAACAGAGTGCGCCTCCCTCGTGGAAAGCGAACCGGATCAGGCCGCGGAATCCCTCGCCCGGCTGAGAAAATCAGTATCCCAGCACGGAAATCCCACTCAGCGAGTGGGCTTTTACTTCTGCGAAGCCCTCTCCCGTAAAATATGGGCCGAGCAGGACAAGGGAGAGCCCAAAAGTGCGAAGACAACCACCTCAGAGGAGTTGACGCTGTCTTACAAAGCCCTCAACGATGCCTGCCCGTACTCCAAGTTCGCACACTTAACCGCCAACCAAGCCATCTTGGAAGCCACCGAAGACGCCTCCAACATACACATCCTGGACTTCGGCATCGTCCAAGGGATTCAGTGGGCCGCGCTCTTGCAGGCTTTCGCCACTCGCTCTTCCGGAAAGCCCAATAAGATCAAAATCTCTGGGATTCCCGCCATCGCTCTTGGGGCCTCGCCCGGCCCATCTCTCTCCGCCACCGGCAACCGCCTCTCCGAGTTCGCGAAGCTCCTCGACCTGAACTTCGAGTTCACGCCTATTCTCACTCCCATTCACGACCTCGACCGCAAGAGCTTTTGCATTGACCCCGACGAGGCACTGGCGGTGAACTTCATGCTCCAGTTGTACAACCTACTTGACGAGCCCCCGACCGCAGTTGACACCGCCCTCCGGTTGGCGAAATCTCTCAACCCCAAAATCGTTACCCTCGGCGAGTACGAGGCAAGCTTGACACGTGTCGGCTTTGTGAACCGCTTCAAGACCGCGTTCAGGTACTTCTCCGCTGTTTTCGAGTCGCTGGACCCTAACTTGGCCGCGGACTCACCGGAGAGGTTTCAGGTGGAGAGTCTTCTCCTGGGGCGGCGAATCGACGCGGTGATTGGGCCTGGGCCGGTGAGGGAGAGCATGGAGGACAGGGAGCAGTGGAGGGCTCTGATGGAACGTGCTGGGTTTGAGTCTGTGAGTCTGAGTCATTATGCAGTTAGTCAGGCGAAGATACTTCTCTGGAATTACGGTTACAGCTCTCTGTTTTCGCTGCTTGAATCCACGCCGCCAGGCTTCTTAACTCTCGCTTGGAAAGATGTTCCTCTCTTGACTCTCTCCTCGTGGCGCTAA 1692 0.5762 MKCCDVICRGEEGMAYMCADSGNLMAIAQQVIKQKQQQEQQQQKQHQQHHQHHHHHHHHHHHQHHLNPLSLHPIPWNNTPTLGYPLHPTDFPDPFQPDPPFHFPDTQSAPAPANFRFSDFDSDDWMDSLIAAADTPSWHTNADFPFPSDLNRLIFPSSDTTAAATSLPLQPTPPPPPQEPVNAGLSSEPESAHPLLKALTECASLVESEPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEQDKGEPKSAKTTTSEELTLSYKALNDACPYSKFAHLTANQAILEATEDASNIHILDFGIVQGIQWAALLQAFATRSSGKPNKIKISGIPAIALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHDLDRKSFCIDPDEALAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSPERFQVESLLLGRRIDAVIGPGPVRESMEDREQWRALMERAGFESVSLSHYAVSQAKILLWNYGYSSLFSLLESTPPGFLTLAWKDVPLLTLSSWR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6898g00008 563 MobiDBLite consensus disorder prediction 163 190 - -
Vium6898g00008 563 MobiDBLite consensus disorder prediction 168 182 - -
Vium6898g00008 563 Pfam GRAS domain family 196 563 IPR005202 -
Vium6898g00008 563 MobiDBLite consensus disorder prediction 31 72 - -
Vium6898g00008 563 MobiDBLite consensus disorder prediction 47 67 - -
Vium6898g00008 563 MobiDBLite consensus disorder prediction 90 106 - -
Vium6898g00008 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 164 557 IPR005202 -
Vium6898g00008 563 ProSiteProfiles GRAS family profile. 186 563 IPR005202 -
Vium6898g00008 563 MobiDBLite consensus disorder prediction 85 113 - -
Vium6898g00008 563 Coils Coil 25 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6898g00008 Vium-Chr6898 48213 50676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6898g00008 14 563 GRAS Transcription Factor Family AT5G66770 55.887 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium6898g00008 GRAS 8.4e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6898g00008 - - gmx:100800989 720.694