Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6898g00006 ATGGATGCCCCCAAGGATCATCAAAATGTTGTAACCATAGATGTCCATGCTGCTAAAAATCTGCTAAATTCATCAGATTATCGTTATCTGGATGTGAGGTCAGTTGAGGAATTCAATAAAAGCCATGCTGAGAATGCATATAATGTCCCCTACATGTTCATCACAGAAGCAGGACGGGTGAAAAATCCAGATTTTGTTGAGCAGGTGGCAGCAATATGCGAGAATGAGGATCATTTGATTGTGGCTTGCAACAGCGGAGGAAGATCACTCCGAGCCAGCGTTGACTTACTTGATTCGGGATTTAAACATATTGTGAATATGGGAGGAGGCTACTCTGCATGGGTTGATGCTGGATTTGCTGGGGACAAGCCACCGGAAGAGCTCAAAACTAGTTGTAAGATTCGTCGTTAA 411 0.4355 MDAPKDHQNVVTIDVHAAKNLLNSSDYRYLDVRSVEEFNKSHAENAYNVPYMFITEAGRVKNPDFVEQVAAICENEDHLIVACNSGGRSLRASVDLLDSGFKHIVNMGGGYSAWVDAGFAGDKPPEELKTSCKIRR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6898g00006 136 Gene3D - 2 120 IPR036873 -
Vium6898g00006 136 Pfam Rhodanese-like domain 17 116 IPR001763 -
Vium6898g00006 136 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 8 119 IPR036873 -
Vium6898g00006 136 SMART rhod_4 13 120 IPR001763 -
Vium6898g00006 136 ProSiteProfiles Rhodanese domain profile. 23 123 IPR001763 -
Vium6898g00006 136 PANTHER THIOSULFATE SULFURTRANSFERASE 18 3 123 IPR044684 GO:0003824
Vium6898g00006 136 CDD RHOD 18 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6898g00006 Vium-Chr6898 25852 27192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6898g00006 8 127 Sulfurtransferasese or Rhodanese AT5G66170 46.721 1.83e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6898g00006 K22547 - gmx:100794624 252.677