Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6898g00003 ATGTTAGTTACTTTGGACGAAACTACCCACATTTTCCGATCAAAGTTACCAGACATACCACTCCCTAACAACCTCCTCCTCCACGAATACTGCTTCCTTAAACTTCCCGAAGTCGCCCACCGCACATGCCTCATCTCCGCCGCCAGAACCTACACCTACGCCGAAACTCACCGCGCCTCGCGGAAGGTTGCCGCCGGCATGTCGAAGCTGGGCATCCAGAAGGGCGACGCCGTCATGATTCTCCTCCCCAACTCCCCGGAGTTCGTGTTCACCTTCATGGCGGTCTCCATGCTCGGCGCCGTCGCCACAACCGCCAACCCCTCCTACACCGCCGCCGAACTCTCCAAGCAACTCGCCATCTCCAACGCCAAGCTCGTCGTCACCCTCTCCGCCCACGTCCACAAGCTCAATCAGCAAGCGCAGCACCACTTCTTCAAGGTGGTCACCGTCGACGACCCACCGGAGAATTTCTCGGCTTTCCCGGAGGGCGAAGAGAGCGAGGTTCCGGAGGTTGAGATATCAGTGGAGGACACGGTGGCGCTGCCGTTTTCGTCGGGGACGACGGGGCTAGCGAAGGGGGTGATTCTGACGCACAAGAGTTTGGTAACCAGCGTGGCGCAACAAATGGAGGGAGAGAACCCGCACATGTATCTGAAAGAAGAGGACGTTGTGCTGTGCGTGCTTCCTCTCTTTCACATATTCGCCATGCACATCGTGATGATGTGCGGGATGAGAGCGGGGAGTGCCATTTTGTTGATCGAGAAGTTTGAGATGAGGGCGCTGCTGCAGGCGATTGAGCGGCACAGGGTGACGGTGGCGATACTGGTGCCGCCCCTGGTGGTGGCACTTACGAAGAACAGCGCGGTGGAGGAGTACGATTTGAGTTCGATACGAATGGTGATGTCGGGGGCTGCGCCGCTGGGGCTACAGGCGGAGGAGGCTCTGCGGAACAGGTTGCCTCACGCCATTATAGGACAGGGCTATGGGATGACAGAGAGTGGACCAGTATTGACCATGTCTTTGGGTTTTGCAAAGTTTCCATTTCCAACCAAGTCTGGTTCGTGCGGAACTGTGGTGAGAAATGCTGAAATGAAGATCATTGACCCTCTAACTTCATTCTCTCTTCCCCGTAACCACCATGGCGAGATTTGCGTCCGTGGCTCTCAGATCATGAAAGGGTACCTGAATGACGAGAAGGCCACTGCAGAAACCATTGATGCAGATGGTTGGCTTCATACTGGTGACATTGGCTACGTTGATGATGATGATGAGGTTTTCCTCGTTGACAGGGCCAAAGAACTCATCAAATTCAAAGCTTTCCAGGTGCCGCCGGCAGAACTTGAAGACCTTCTCAGGAGCCACCCTTCCATTGCAGATGCAGCTGTTGTCCCGTAA 1395 0.5548 MLVTLDETTHIFRSKLPDIPLPNNLLLHEYCFLKLPEVAHRTCLISAARTYTYAETHRASRKVAAGMSKLGIQKGDAVMILLPNSPEFVFTFMAVSMLGAVATTANPSYTAAELSKQLAISNAKLVVTLSAHVHKLNQQAQHHFFKVVTVDDPPENFSAFPEGEESEVPEVEISVEDTVALPFSSGTTGLAKGVILTHKSLVTSVAQQMEGENPHMYLKEEDVVLCVLPLFHIFAMHIVMMCGMRAGSAILLIEKFEMRALLQAIERHRVTVAILVPPLVVALTKNSAVEEYDLSSIRMVMSGAAPLGLQAEEALRNRLPHAIIGQGYGMTESGPVLTMSLGFAKFPFPTKSGSCGTVVRNAEMKIIDPLTSFSLPRNHHGEICVRGSQIMKGYLNDEKATAETIDADGWLHTGDIGYVDDDDEVFLVDRAKELIKFKAFQVPPAELEDLLRSHPSIADAAVVP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6898g00003 464 Gene3D - 431 464 IPR045851 -
Vium6898g00003 464 Gene3D - 3 430 IPR042099 -
Vium6898g00003 464 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 432 - -
Vium6898g00003 464 SUPERFAMILY Acetyl-CoA synthetase-like 6 464 - -
Vium6898g00003 464 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 464 - -
Vium6898g00003 464 Pfam AMP-binding enzyme 40 437 IPR000873 -
Vium6898g00003 464 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6898g00003 Vium-Chr6898 19687 21239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6898g00003 11 463 Monolignol Biosynthesis Gene Families AT3G21240 60.606 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6898g00003 K01904 - gmx:100790396 721.85