Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6887g00001 ATGCCCGTCATCGCCGCAAAACGCTCGTTGCGATCTCATCCTTCCTCGCCTCCCCGCAAATCGCCTCGCCGATGCACCGCAGCAACCGCCAATTCTTCCCGCAATGTAAACAATTTCGGCACAGATGAAAACCAAGTTGATCCGGCAGCTGTGAAACCCAGGTGGAATCCCAAAGATGGTGAGCAAATAAAGGCGGTGAAGCTAGCATTGCACTTGTCCACTGCGCCGTCTTCGGTCGTGTGCCGTGAGGAGGAGCAGAATGTTGTTTTGGAGTTCTGCAAAGGGTGCGTTGAGCATAAAAAGGCCGGGAGTCTGTACATTTGCGGGTGTCCCGGAACCGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCAATTACTCAATTGGTCTAAGGAGGCAGGTCTCTCGCTGCCAGATGTTTTATTCGTGAACTGCACAACTCTTGCTAGCACATCTGATATTTTCACAAAGATGGTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCAGCCTCGCCCTTACAGCAACTTCATAACATGTATTCTCAGAAATCATCTATCAACAACATGACATTGATAGTAGCTGACGAATTAGATTATTTGATAACCAAAGACAGAGCCGTTCTTCATGATCTTTTTATGCTCACTACCTTTCCATTTTCTAGATGTATATTGATAGGTGTAGCGAATGCAATTGATTTAGCTGATCGATTTCTTCCGAGGCTTACATCATTAAATTGCAAGCCTGTGGTTGTAAATTTCCAGGCTTACTCGAAAGATCAGATCCTCAAGATTCTTGAAGAAAGATTAAAGGAACTTCCTTACATTGTCTTTCAACAGCCGGCCCTGGAACTATGTGCTAGGAAAGTTGCCGCATCTTCTGGAGACATGCGGAATGCCCTTTCTATATGCTGGAGTGCAATCGAGATGCTTGAAGCAGAAATTAGAGAATCTGCGTGCAATTTGAACACTTCATTGGAAGAGATATCATTCTCCAAACAAAATCTTCCCACAGCTCCTGATTGTATGAAAAAACGTGAATTTGATATTGTGAGAACTGATCATATGTCTCGTGCCTTGTCCAAGACTTATAGGTCACCTGTGGTGGATACGATACAATCTCTGCCACATCATCAGCAGATTATACTCTGCTCTTCTATGAATCACTTTCGAGAAGCCAAGAAAGATACATTCCTAGGAGATTTGTATCAATCGTATGTGGGGATATGCAGATCATCTTTAATTCCTCCAGCAGGAATCTTAGAATTTTCGAACATGTGCAGAGTGCTAAGTGACCAGGGTCTTATTAAACTAGGACAATCTCGAGAGGATAAATTAAGAAGAGTGTCGCCTAAAGTAAATGAGGGTGATATTACTTTTGCATTGCAGGGGATACGGTTTTTTCACAACTGTCTTAAATGA 1422 0.4325 MPVIAAKRSLRSHPSSPPRKSPRRCTAATANSSRNVNNFGTDENQVDPAAVKPRWNPKDGEQIKAVKLALHLSTAPSSVVCREEEQNVVLEFCKGCVEHKKAGSLYICGCPGTGKSLSMEKVKEQLLNWSKEAGLSLPDVLFVNCTTLASTSDIFTKMVGLNQTQGKKVSASPLQQLHNMYSQKSSINNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPVVVNFQAYSKDQILKILEERLKELPYIVFQQPALELCARKVAASSGDMRNALSICWSAIEMLEAEIRESACNLNTSLEEISFSKQNLPTAPDCMKKREFDIVRTDHMSRALSKTYRSPVVDTIQSLPHHQQIILCSSMNHFREAKKDTFLGDLYQSYVGICRSSLIPPAGILEFSNMCRVLSDQGLIKLGQSREDKLRRVSPKVNEGDITFALQGIRFFHNCLK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6887g00001 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 317 IPR027417 -
Vium6887g00001 473 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 21 471 - -
Vium6887g00001 473 MobiDBLite consensus disorder prediction 25 44 - -
Vium6887g00001 473 MobiDBLite consensus disorder prediction 1 49 - -
Vium6887g00001 473 Pfam AAA domain 100 217 IPR003593 GO:0016887
Vium6887g00001 473 CDD Cdc6_C 376 458 IPR015163 -
Vium6887g00001 473 PIRSF Cdc6 5 473 IPR016314 GO:0006270|GO:0051301
Vium6887g00001 473 Coils Coil 308 328 - -
Vium6887g00001 473 Gene3D - 60 247 IPR027417 -
Vium6887g00001 473 FunFam Cell division control protein 375 465 - -
Vium6887g00001 473 Gene3D - 372 456 IPR036388 -
Vium6887g00001 473 Pfam CDC6, C terminal winged helix domain 383 461 IPR015163 -
Vium6887g00001 473 SUPERFAMILY "Winged helix" DNA-binding domain 368 471 IPR036390 -
Vium6887g00001 473 SMART Cdc6_C_2 383 462 IPR015163 -
Vium6887g00001 473 FunFam Cell division control protein 60 245 - -
Vium6887g00001 473 Gene3D - 248 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6887g00001 20 472 Core DNA Replication Machinery Family AT2G29680 58.874 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6887g00001 K02213 - gmx:100791200 811.601