Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6883g00008 ATGTCCCTTGAAGACTCTCTAAGATCTCTCTCCCTCGATTACCTCAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTCGAGGGTCGCCTCGTCCACGCCCACCGCTGCATACTCGCCGCCCGTAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCGGACCCTCCCTCCGCTCTCGACCCCGCCGGCCCGCGACTCAACTCGCGCTCCGGCGTCATCCCAGTCAACTCCGTCGGCTACGAGGTCTTCCTTCTCATGCTCCAGTTCCTCTACAGTGGCCAAGTCTCCATCGTCCCTCCCAAGCACGAGGCCCGCCCCAATTGCGGCGAACGAGGCTGCTGGCACACGCATTGCACTTCCGCAGTCGATCTCGCCCTTGACACCCTCGCCGCCGCCAGATACTTCGGCGTCGAACAGCTTGCATTGCTTACCCAGAAACAACTTGCGAGCATGGTGGAGAAGGCTTCCATAGAGGATGTAATGAAAGTGCTGTTGGCTTCCAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTAGTAGCGAAATCAGGTCTTCCTCCGGAGGTTCTCGCCAAGCACCTTCCCATAGACATTGTGGCCAAGATCGAAGAGCTACGTATCAAATCCTCCATGGCGCGCCGCTCCTTGGTGCCACACCACCACCATCACCCCCACCACCACCACGCCGCCCTCGATCTCGAGGACCAGAAAATCCGCCGAATGAGGCGTGCCCTGGACTCCTCCGACGTCGAACTCGTGAAGCTCATGGTAATGGGGGAGGGTCTCAACCTGGACGAAGCACTGGCCTTACCCTATGCGGTGGAGAACTGCAGCAGAGAGGTGGTGAAGGCATTGCTGGAACTAGGTGCAGCAGACGTCAACTACCCCTCCGGTCCCGCGGGGAAAACGCCACTCCACATTGCGGCGGAGATGGTGTCACCTGACATGGTGGCCGTGCTGCTGGACCACCACGCGGACCCAAACGTGAGAACAGTTGATGGGGTCACGCCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTTAAGGGTGCCGTCCCAGGATTGACCCACATAGAACCCAATAAACTGAGACTGTGTTTGGAGCTTGTTCAATCGGCAGCTCTTGTCATGTCAAGAGAAGAAGGCAATGCCAACAACAACAACGCGCCTTCCAATTCCGCAGCACCCATTTACCCTCCCCCCATGAACGAGGACCATAACAGCAGTAGTAGCAGCGGCAATAACAACAACAACATTGGAAATCTGAACCTGGATTCAAGGTTGGTGTATCTGAACCTTGGTGCGACAGCTTCGATGAGTTCACGGTTGGACGGTGGTGAGGAGGAGAGGGAAGCCATGAACACAAACATGTACCACCATCACCACTCTCATGACTTCTAG 1428 0.5658 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSALDPAGPRLNSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPPKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRIKSSMARRSLVPHHHHHPHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNAPSNSAAPIYPPPMNEDHNSSSSSGNNNNNIGNLNLDSRLVYLNLGATASMSSRLDGGEEEREAMNTNMYHHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6883g00008 475 Gene3D Potassium Channel Kv1.1; Chain A 4 189 IPR011333 -
Vium6883g00008 475 SMART ANK_2a 272 302 IPR002110 GO:0005515
Vium6883g00008 475 SMART ANK_2a 307 336 IPR002110 GO:0005515
Vium6883g00008 475 Pfam Domain of unknown function (DUF3420) 191 249 IPR024228 -
Vium6883g00008 475 ProSiteProfiles Ankyrin repeat region circular profile. 307 337 - -
Vium6883g00008 475 Pfam Ankyrin repeats (3 copies) 255 337 IPR002110 GO:0005515
Vium6883g00008 475 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Vium6883g00008 475 SUPERFAMILY POZ domain 8 154 IPR011333 -
Vium6883g00008 475 MobiDBLite consensus disorder prediction 412 428 - -
Vium6883g00008 475 FunFam regulatory protein NPR5 isoform X2 238 355 - -
Vium6883g00008 475 Gene3D - 234 355 IPR036770 -
Vium6883g00008 475 CDD BTB_POZ_NPR_plant 8 156 - -
Vium6883g00008 475 FunFam regulatory protein NPR5 isoform X1 4 189 - -
Vium6883g00008 475 MobiDBLite consensus disorder prediction 391 428 - -
Vium6883g00008 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 466 IPR044284 GO:0099402
Vium6883g00008 475 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Vium6883g00008 475 SMART BTB_4 25 156 IPR000210 GO:0005515
Vium6883g00008 475 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Vium6883g00008 475 SUPERFAMILY Ankyrin repeat 266 350 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6883g00008 Vium-Chr6883 132619 136226 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium6883g00008 BTB 7.1e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6883g00008 K14508 - gmx:100816086 804.283