LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6883g00001	ATGGCCCACAACCGAAGAGACTCCGAATCTTTCATGGATGATTTCGATGGGGATGATAACGAAGAACATAACACACAATCTGCTGATTACAGGAGTGAGCACAGTAATCAATGTGACAGTGACGAGGAGGGGCATCGTAAAACGCACCCTGAATCTTCTTTCATTTCTCAGCAGTGGCCTCAAACTTATAGAGATGCCATTGATTCTTACACAATATCTGTGGCTCCAAATATTGAATCAATAATACGAGCACCAAGTGTTATTTATTCAAGCTTTATCGGTGGTGGTTCAAAGAGTATGTTGGAACATGATGAAAGGACTTCTTTTCTATCTGGTGAGGAAATCATTCAAGCAGGGATATCAAGAAGACAATCAACATGGTGGGAAAAAGCTTCAATTCAAATGCAAATTCCTGAAGAGTTACCAATTGGTTATGGATGCAGCCTCAGTCAAACAATATTTAACGGGATTAATGTGATGGCTGGAGTTGGACTTCTTTCTACACCATATACAGTGAAACAAGCTGGGTGGGCAAGCATGCTTGTGATGCTTTTCTTTGCAATTGTATGTTGTTATACAGCAGATCTTATGAAACACTGCTTTGAAAGCGAAGAAGGTATCGTTAGCTACCCTGATATAGGAGAAGCTGCATTTGGAAGATATGGTCGCCTTATTGTATCAATCATTTTGTACGTTGAGTTATATTCATATTGTGTAGAGTTTATCATCTTGGAAGGAGATAACCTCTCTGGGTTGTTCCCCGGAACATCCTTAGATTGGGGGGGTTTCCACTTGGACACCAAACACTTGTTTGGAATTTTAACTGCGCTTATCATTCTTCCGACTGTTTGGTTAAAGGATCTACGCATACTCTCGTATCTCTCAGCTGGAGGGGTTGTGTCTACTACTGTGGTTATTTTGTGTGTTTTTCTTGTTGGGACAAGAGATGATGTTGGATTCCACCACAGTGGTTCATTGGTGAATTGGAGTGGCATTCCTTTTGCTGTTGGTATCTACGGGTTTTGCTTTGCAGGACATTCAGTTTTTCCAAACATTTATCAGTCTATGGCAGACAAAAGAGAATTTACCAAGGCTGTCATTGTAAGTTTTCTTATATGCACAGTTGTGTATGGAAGCTCAGCCGTGATGGGATTTCTAATGTTTGGTGAAGGGACTTTGTCTCAGATAACATTGAATTTACCACGTAATGCATTGGCTTCCAAAGTTGCTTTGTGGACAATAGTAATTAGCCCATTAACCAAATATGCTTTGATGATGAACCCATTGGCAAGGAGCGTTGATGAGTTGCTACCGATTAGCATGTCAAATAGTTATTGGTGTTTCATTACTCTTAGAACAGTGTTGGTTATATCTACAGTTTGTGCCGCTTTTATGATTCCATTTTTTG	1408	0.4006	MAHNRRDSESFMDDFDGDDNEEHNTQSADYRSEHSNQCDSDEEGHRKTHPESSFISQQWPQTYRDAIDSYTISVAPNIESIIRAPSVIYSSFIGGGSKSMLEHDERTSFLSGEEIIQAGISRRQSTWWEKASIQMQIPEELPIGYGCSLSQTIFNGINVMAGVGLLSTPYTVKQAGWASMLVMLFFAIVCCYTADLMKHCFESEEGIVSYPDIGEAAFGRYGRLIVSIILYVELYSYCVEFIILEGDNLSGLFPGTSLDWGGFHLDTKHLFGILTALIILPTVWLKDLRILSYLSAGGVVSTTVVILCVFLVGTRDDVGFHHSGSLVNWSGIPFAVGIYGFCFAGHSVFPNIYQSMADKREFTKAVIVSFLICTVVYGSSAVMGFLMFGEGTLSQITLNLPRNALASKVALWTIVISPLTKYALMMNPLARSVDELLPISMSNSYWCFITLRTVLVISTVCAAFMIPFF	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6883g00001	469	MobiDBLite	consensus disorder prediction	1	58	-	-
	Vium6883g00001	469	FunFam	Amino acid transporter AVT1A	145	469	-	-
	Vium6883g00001	469	MobiDBLite	consensus disorder prediction	21	50	-	-
	Vium6883g00001	469	Pfam	Transmembrane amino acid transporter protein	148	469	IPR013057	-
	Vium6883g00001	469	PANTHER	OS05G0424000 PROTEIN-RELATED	156	469	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6883g00001	Vium-Chr6883	145	3303	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6883g00001	54	469	Amino Acid or Auxin Permease AAAP Family	AT2G41190	63.636	0.0	558

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6883g00001	K15015		-	gmx:100790344	648.662