Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium687g00001 ATGATACAGGAGCTTTACATACTTGAAATGTCGGAGAGAAATGATGATAAGGGAAAGAGGATCATCATTGGTGTTTCAACCTTGTTCTTGGTGGCTGTAGTTGGGGCTATCGTGTTTGGTATCAGCCTCAATGAGAGTGGTTCAAATGGAAATGGTGATAATGTTAATAACAAAAAGGAACATGTTACTGCCTCTGTAAAAGCCGTCCAAACCCTTTGTAATCCCACGAATTACAAGGAAGAATGTGAGGAAAATCTCATGGCAGGTGTCGGAGACAGCACAACAACAAATCCATACGAACTTATCAAACTTGCTTTCAATATCACCATTGAAAAAATTACTGATAAATTCGAAGAAATGAATATCTTGCATGACATTGAGAAGGAGCCCAGAGCCAAGATGGCACTCGAAACATGCAGACAACTCATGGATCTTTCGGTTTCGGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTGATGAGTGTTGATAAAATCCTCATGAACTTAAAAGTTTGGCTGAGTGGTGCACTTACATACCAAGACACTTGCTTGGATGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGGTCTTGCCATCATATCAGCATTGTCTGATACTTTCACAAATTTGAATGCCACAAAATTATTGGGACGTCGCCTCTTTCAAGATTCTGAATCACCCTCATCGGTTAATAATGGAGGACTAAATGAAACTCTGATATTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGCAGTGGAGATTTCAAAACCATCAACGAAGCACTGAACAAAGTACCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACCAAGAGTATGTCGAAGTTAAAAAGAATATGACTCATGTGGTTTTCATTGGTGACGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGAGTCACCACCTATAAAACTGCCACAGTCGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACGCCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGATCCGAAAGCCAATGGAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAAGAACAACCGTCTGCAATA 1368 0.4094 MIQELYILEMSERNDDKGKRIIIGVSTLFLVAVVGAIVFGISLNESGSNGNGDNVNNKKEHVTASVKAVQTLCNPTNYKEECEENLMAGVGDSTTTNPYELIKLAFNITIEKITDKFEEMNILHDIEKEPRAKMALETCRQLMDLSVSELERSFIGMSEFNLMSVDKILMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNGLAIISALSDTFTNLNATKLLGRRLFQDSESPSSVNNGGLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGVTTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHALRQYYRDCTISGTIDFVFGNALAVFQNCTFVIRKPMENQQCIVTAQGRKEKEQPSAI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium687g00001 456 CDD PMEI-like_3 71 223 - -
Vium687g00001 456 Pfam Plant invertase/pectin methylesterase inhibitor 68 218 IPR006501 GO:0004857
Vium687g00001 456 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Vium687g00001 456 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 223 IPR035513 -
Vium687g00001 456 FunFam Pectinesterase 65 223 - -
Vium687g00001 456 SMART PMEI_2 64 218 IPR006501 GO:0004857
Vium687g00001 456 FunFam Putative pectinesterase 57 263 456 - -
Vium687g00001 456 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Vium687g00001 456 NCBIfam pectinesterase inhibitor domain 64 222 IPR006501 GO:0004857
Vium687g00001 456 Pfam Pectinesterase 265 454 IPR000070 GO:0030599|GO:0042545
Vium687g00001 456 SUPERFAMILY Pectin lyase-like 263 454 IPR011050 -
Vium687g00001 456 Gene3D - 260 456 IPR012334 -
Vium687g00001 456 PANTHER PECTINESTERASE 25 455 - -
Vium687g00001 456 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 223 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium687g00001 Vium-Chr687 9 1519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium687g00001 10 452 Carbohydrate Esterase AT3G05610 48.559 1.19e-155 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium687g00001 K01051 - gmx:100803527 646.736