Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6873g00004 ATGGTGTGCATAAGGAAGGCGACGGTGAAGGACCTTCTGGCGATGCAGGCGTGCAACCTCTTCTGCCTCCCTGAGAACTACCAGATGAAGTATTACTTCTATCATATCCTCTCATGGCCTCAGCTTCTCTACGTCGCCGAAGACTACAACGGTCGCATCGTTGGCTACGTCCTCGCCAAGATGGAGGAGGAAACCACCGACTGCCACGGCCACATCACCTCCCTTGCCGTCCTCCGCACCCACCGCAAACTCGGTCTCGCCACCAAACTCATGACCGCCGCACAGAACGCCATGGAACAGGTGTTTGGTGCCGAGTACGTGTCCCTGCACGTGCGCAAGAGCAACCGCGCNTAA 354 0.5734 MVCIRKATVKDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETTDCHGHITSLAVLRTHRKLGLATKLMTAAQNAMEQVFGAEYVSLHVRKSNRA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6873g00004 117 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1 117 IPR016181 -
Vium6873g00004 117 Gene3D - 2 117 - -
Vium6873g00004 117 CDD NAT_SF 43 110 - -
Vium6873g00004 117 Pfam Acetyltransferase (GNAT) family 39 116 IPR000182 GO:0016747
Vium6873g00004 117 FunFam N-alpha-acetyltransferase daf-31-like 2 117 - -
Vium6873g00004 117 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 2 117 IPR000182 GO:0016747
Vium6873g00004 117 PANTHER N-TERMINAL ACETYLTRANSFERASE 1 117 IPR045047 GO:0004596|GO:0006474|GO:0031415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6873g00004 Vium-Chr6873 23145 23770 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium6873g00004 Acetyltransf_1 1.1e-12 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6873g00004 K20791 - gmx:100800073 239.195