Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6869g00001 ATGTTACAAAGAAACAGCTTAATATCTATCAAGGAATATCTATCTATTTTACGATCTAGTGGAATTCTGATCAAATTTTCTGTTTTCATCTCAGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCAGATTTTGGTCTAGCCAGAGAAGAGTCCTTAGCAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAACATTACAACCATAAGGTGGATGTCTACAGTTTTGCTATAGTGCTGTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAGTACAAGGCCGAGCGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACTTCTTGTTGGAAAGAGGAACCAAATGATCGACCCAATTTTAGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGCTCCAATGCGTATTTCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTCGAAGAGATGATTCTGGCGAAACCCCGAAAGTTGATATTGAAGGCAGGTCTAAAGGGTGTTTCTTCTGCTTTAATCAATGTTACTGA 693 0.4069 MLQRNSLISIKEYLSILRSSGILIKFSVFISDNLILTEDHKTVKLADFGLAREESLAEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDVYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKSTRPSAEDLPDELALIVTSCWKEEPNDRPNFSQIIQMLLRYLITISPADPVAPMRISSSKNAVLPPESPGTSALMARRDDSGETPKVDIEGRSKGCFFCFNQCY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6869g00001 230 MobiDBLite consensus disorder prediction 186 212 - -
Vium6869g00001 230 Gene3D Transferase(Phosphotransferase) domain 1 28 178 - -
Vium6869g00001 230 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6869g00001 230 Pfam Protein tyrosine and serine/threonine kinase 35 164 IPR001245 GO:0004672|GO:0006468
Vium6869g00001 230 SUPERFAMILY Protein kinase-like (PK-like) 31 188 IPR011009 -
Vium6869g00001 230 PANTHER SERINE-THREONINE PROTEIN KINASE 31 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6869g00001 Vium-Chr6869 11942 14814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6869g00001 8 230 MAP Kinase Kinase Kinase AT5G50180 69.058 5.12e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium6869g00001 PK_Tyr_Ser-Thr 6.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6869g00001 - - pvu:PHAVU_001G096600g 380.563