Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6863g00009 ATGGATAAAGTAGATAAAGCGTGTGCCAAAGATGAAGAACGTCCAATCCGTATCACCAGAGCAAAGACTAGAGCTATGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCTGGAAATGAACAGAAAAACATGTCTCGAGCAAATTCCAAAAGAGCAGCCGCTTCTGGAGATCAAACTTCTGTGGTTGTTCCTGCTCTTATCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATACATGATAAGTGTACTAATGCATCAAAATTTATGGCCAAAGGAGTTTATACAAAGAAAAGCACAAAACTAGCTTCAGGTATTACCTCTGAATTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTAGTTGAAGATTTATCAACAATAAGGATGGTAGAATCCGATGACTCCATAAGTGAACGTGTTATACCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGATGAAGTCCAGAGCTCTTCAAAAAATGATGTAGATGTGATTTCTGAGAAGTCAGGAACCTCAAACTCCCTTGATATAGTGGACATTGATTCAGAGTTAAGGGATCCTCAAATTTGGAGTTCTTATGCCTCTGACATGTACAACAACATTCGAGTCTCAGAGCTTGAAAGGAAACCATTGACCAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGCATGCGTGGAATTCTGGTAGATTGGCTTGTGGAGGTTTCTGAGGAATACAGATTGGTTCCAGATGCCCTTTACCTGACAGTGAACCTCATTGATCGGTATCTATCAACTAAATTCATTCAGAAGCAAAGACTACAGTTGCTGGGTGTTACTAGCATGCTAATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTCTGCTTCATCACAGATAACACATACACAAAGGAAGAGGTACTGAAAATGGAGAGAGAAGTACTGAATGTGATTCATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATACATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTTTTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATATAGCTTCTTCCAGTTTCTTCCTTCCCTTGTAGCTGCATCTGCCGTGTTCCTTGCCAGATGGACCCTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTACACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGAACTGCAAGATTTGCAACTTAATTCCAAAGGCTGTCCCCTCAATGCTGTTCGCGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCCCCAAAACCGGTGCAGTCACTCTTCCAGGGCCAAGTGTAA 1398 0.4127 MDKVDKACAKDEERPIRITRAKTRAMRGIPPPPSRPSSGNEQKNMSRANSKRAAASGDQTSVVVPALIQNKRRAVLTDVTNIHDKCTNASKFMAKGVYTKKSTKLASGITSEFSSTQENVRAKLVEDLSTIRMVESDDSISERVIPGTKPSMQDSVKSDEVQSSSKNDVDVISEKSGTSNSLDIVDIDSELRDPQIWSSYASDMYNNIRVSELERKPLTNYMEKLQTDINPSMRGILVDWLVEVSEEYRLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREVLNVIHFQLSVPTIKTFLRRYIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVLELQDLQLNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFQGQV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6863g00009 465 Pfam Cyclin, C-terminal domain 332 454 IPR004367 -
Vium6863g00009 465 CDD CYCLIN_AtCycA-like_rpt2 332 446 - -
Vium6863g00009 465 Gene3D - 217 330 - -
Vium6863g00009 465 MobiDBLite consensus disorder prediction 1 20 - -
Vium6863g00009 465 SUPERFAMILY Cyclin-like 192 329 IPR036915 -
Vium6863g00009 465 SMART cyclin_7 336 424 IPR013763 -
Vium6863g00009 465 SMART cyclin_7 239 323 IPR013763 -
Vium6863g00009 465 SUPERFAMILY Cyclin-like 331 454 IPR036915 -
Vium6863g00009 465 Gene3D - 203 451 - -
Vium6863g00009 465 SMART Cyclin_C_2 332 455 IPR004367 -
Vium6863g00009 465 MobiDBLite consensus disorder prediction 1 58 - -
Vium6863g00009 465 FunFam Mitotic cyclin 6 217 317 - -
Vium6863g00009 465 PIRSF Cyclin_A_B_D_E 20 463 IPR046965 GO:0016538|GO:0044772
Vium6863g00009 465 MobiDBLite consensus disorder prediction 146 174 - -
Vium6863g00009 465 FunFam Cyclin A1 319 451 - -
Vium6863g00009 465 ProSitePatterns Cyclins signature. 234 265 IPR006671 -
Vium6863g00009 465 CDD CYCLIN_AtCycA_like_rpt1 193 328 - -
Vium6863g00009 465 MobiDBLite consensus disorder prediction 143 174 - -
Vium6863g00009 465 PANTHER CYCLINS 162 443 IPR039361 -
Vium6863g00009 465 MobiDBLite consensus disorder prediction 38 58 - -
Vium6863g00009 465 Pfam Cyclin, N-terminal domain 203 329 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6863g00009 Vium-Chr6863 75774 81656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6863g00009 7 461 Core Cell Cycle Gene Families AT5G25380 50.219 2.66e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6863g00009 K06627 - gmx:547780 704.516