Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6863g00007 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAGCAACACTGTCAACCAGACTTTGGTCCTTCATGACTTTCTGGGCATGAAGCCCGCAGCTGATTCTCCAAAAACCACCGATGTAAGGTTGTCGGAACCGTCTGCCTCCGCCTCCTCCGCTGGTGGGCGTGGCCCTTTCTCAGCCACCTCCGACATCGCTTCTGAGAAACAGGTAGGAAACCATCTTGAGGGAGTTCCTTTCTATGGCCCGAGGAGTGATCTTTCTGGTGCTGAGATCAGTAACAGATTAGTGGGAAGCAAGAGAAGTAATTCTGATTCCGCTTTTACTGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGATTCATATCAAAACTCACATTTGATGAAGGTTCTCCGCCATGCAGCTGGAGATAGGTCTAGAAGGCCTAATGATGAGGAAATGTTACTTGGTATGCAGTCAATGAAACAATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGTATCCACCCCGTGGAGGGCAATTGGCACCTTTTGTCCACCAAATGGCCTCAAGCAAGATCAGGGATACCAATGCTGGCCCTTCCTTCATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAATGTTGCTGCTATGGGTGCTGAGAAAACTTCTTCTGCTGTGATGCTTGGTGGCAGCAGGGCAAAGCCTGGAAGTAATATCATAGAATCATCCACGCCTCCAAGTCAACCCACCCTAACTTCTGCCAGCCGTCAGATGACTATTTTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCAGATGTTATAATGGCTTTGGCCGGGTCAAATGGCGGATCTTGGTCGACTGCCTTCTCGCCTAAATCTGCTATAAAAATGGTTAGTGATGGGAACTTGCACAGTGGAGAAAATGAAACAGGTGGAGTGAATAATGTAGCCTTCCCACAGGAGCTTCATGGGAAACTGTCTATTACTGCAAGTTCTAGCCATGCCATGGGGCCTGGTGATCGAGTAACTACTCCTGCAGGGGCACACCAAGGTAGCGTTTTTGCTAAAGATACCAGAAATCCAGTTCAACCATCAGATCACAGTTCTGAAGACAAAAGAGGACAATGA 1239 0.4762 MAVLLRMAQPHNGNTSNTVNQTLVLHDFLGMKPAADSPKTTDVRLSEPSASASSAGGRGPFSATSDIASEKQVGNHLEGVPFYGPRSDLSGAEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRHAAGDRSRRPNDEEMLLGMQSMKQSSSQIFQPPTSTKIDANKWERSILMNVGPSMQYPPRGGQLAPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINVAAMGAEKTSSAVMLGGSRAKPGSNIIESSTPPSQPTLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAIKMVSDGNLHSGENETGGVNNVAFPQELHGKLSITASSSHAMGPGDRVTTPAGAHQGSVFAKDTRNPVQPSDHSSEDKRGQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6863g00007 412 SMART tify_2 282 317 IPR010399 -
Vium6863g00007 412 Pfam tify domain 284 316 IPR010399 -
Vium6863g00007 412 MobiDBLite consensus disorder prediction 42 64 - -
Vium6863g00007 412 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 90 357 IPR040390 -
Vium6863g00007 412 MobiDBLite consensus disorder prediction 35 64 - -
Vium6863g00007 412 MobiDBLite consensus disorder prediction 367 412 - -
Vium6863g00007 412 ProSiteProfiles Tify domain profile. 282 317 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6863g00007 Vium-Chr6863 54286 62118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6863g00007 18 315 Tify Gene Family AT4G32570 41.270 8.65e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium6863g00007 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6863g00007 - - gmx:100819293 696.041