Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6863g00006 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAGCAACACTGTCAACCAGACTTTGGTCCTTCATGACTTTCTGGGCATGAAGCCCGCAGCTGATTCTCCAAAAACCACCGATGTAAGGTTGTCGGAACCGTCTGCCTCCGCCTCCTCCGCTGGTGGGCGTGGCCCTTTCTCAGCCACCTCCGACATCGCTTCTGAGAAACAGGTAGGAAACCATCTTGAGGGAGTTCCTTTCTATGGCCCGAGGAGTGATCTTTCTGGTGCTGAGATCAGTAACAGATTAGTGGGAAGCAAGAGAAGTAATTCTGATTCCGCTTTTACTGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGATTCATATCAAAACTCACATTTGATGAAGGTTCTCCGCCATGCAGCTGGAGATAGGTCTAGAAGGCCTAATGATGAGGAAATGTTACTTGGTATGCAGTCAATGAAACAATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGTATCCACCCCGTGGAGGGCAATTGGCACCTTTTGTCCACCAAATGGCCTCAAGCAAGATCAGGGATACCAATGCTGGCCCTTCCTTCATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAATGTTGCTGCTATGGGTGCTGAGAAAACTTCTTCTGCTGTGATGCTTGGTGGCAGCAGGGCAAAGCCTGGAAGTAATATCATAGAATCATCCACGCCTCCAAGCAGTCAACCCACCCTAACTTCTGCCAGCCGTCAGATGACTATTTTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCAGATGTTATAATGGCTTTGGCCGGGTCAAATGGCGGATCTTGGTCGACTGCCTTCTCGCCTAAATCTGCTATAAAAATGGTTAGTGATGGGAACTTGCACAGTGGAGAAAATGAAACAGGTGGAGTGAATAATGTAGCCTTCCCACAGGAGCTTCATGGGAAACTGTCTATTACTGCAAGTTCTAGCCATGCCATGGGGCCTGGTGATCGAGTAACTACTCCTGCAGGGGCACACCAAGGTAGCGTTTTTGCTAAAGATACCAGAAATCCAGTTCAACCATCAGATCACAGTTCTGAAGACAAAAGAGGACAATGA 1242 0.4767 MAVLLRMAQPHNGNTSNTVNQTLVLHDFLGMKPAADSPKTTDVRLSEPSASASSAGGRGPFSATSDIASEKQVGNHLEGVPFYGPRSDLSGAEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRHAAGDRSRRPNDEEMLLGMQSMKQSSSQIFQPPTSTKIDANKWERSILMNVGPSMQYPPRGGQLAPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINVAAMGAEKTSSAVMLGGSRAKPGSNIIESSTPPSSQPTLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAIKMVSDGNLHSGENETGGVNNVAFPQELHGKLSITASSSHAMGPGDRVTTPAGAHQGSVFAKDTRNPVQPSDHSSEDKRGQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6863g00006 413 SMART tify_2 283 318 IPR010399 -
Vium6863g00006 413 ProSiteProfiles Tify domain profile. 283 318 IPR010399 -
Vium6863g00006 413 MobiDBLite consensus disorder prediction 42 64 - -
Vium6863g00006 413 MobiDBLite consensus disorder prediction 368 413 - -
Vium6863g00006 413 MobiDBLite consensus disorder prediction 35 64 - -
Vium6863g00006 413 Pfam tify domain 285 317 IPR010399 -
Vium6863g00006 413 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 90 358 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6863g00006 Vium-Chr6863 54286 62120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6863g00006 18 316 Tify Gene Family AT4G32570 41.270 4.75e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium6863g00006 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6863g00006 - - gmx:100819293 696.041