Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6862g00001 ATGCAATTTTACTTCTGCGGTTTGGGTGAAATTGCAAGACTCTGTAGTCTCCGAACAAGCATGGCGAAAAAGGCAAAAGGGTCTCACTCTACTTCTTCGGCCTCTGCCTCTTCCGCTTCTGGTAAACTAGTTTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCCGTGCGGCAGACTAATTCAAGAAAGAAACCCAAAGCAAAACTAAAGAAGAACAAGCGGAAGTTTGATGCTATGAAGCCGAAGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGAAGAATCCGGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAATGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATGTAGCAACAGACAAACGTGCAGAGTTTGACAGGGCAATGGCAGAATATAACAAGAAAATAGAAAGTGGAGAGTTTGATGAAACTGACGAGGAATCAGAGTTTGATGAGTAA 513 0.4113 MQFYFCGLGEIARLCSLRTSMAKKAKGSHSTSSASASSASGKLVLRIKSNEGIKRSVRQTNSRKKPKAKLKKNKRKFDAMKPKKPPTAFFYFLEDFRKEFQEKNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATDKRAEFDRAMAEYNKKIESGEFDETDEESEFDE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6862g00001 170 SMART hmgende2 81 152 IPR009071 -
Vium6862g00001 170 Gene3D High mobility group box domain 76 166 IPR036910 -
Vium6862g00001 170 Pfam HMG (high mobility group) box 82 151 IPR009071 -
Vium6862g00001 170 MobiDBLite consensus disorder prediction 25 44 - -
Vium6862g00001 170 MobiDBLite consensus disorder prediction 59 79 - -
Vium6862g00001 170 MobiDBLite consensus disorder prediction 25 82 - -
Vium6862g00001 170 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 56 167 IPR031061 -
Vium6862g00001 170 SUPERFAMILY HMG-box 73 154 IPR036910 -
Vium6862g00001 170 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 82 151 IPR009071 -
Vium6862g00001 170 CDD HMG-box_AtHMGB1-like 83 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6862g00001 Vium-Chr6862 14553 23922 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium6862g00001 HMG_box 2.6e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6862g00001 - - vum:124844238 275.018