Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6852g00001 ATGGCCAAGACCATAATGGGAAACATGGGATATTTTTTTACAAGCTATCTTCTAGTTCTAACAATGATGTTCTCAGCAAATGCTCAATTTGCTAAGAAGACTTACCTAGTTCAAATGGATAAGCCAGTAATGCCAAAAGCCTTCACCAACCACCTTGAATGGTATTCATCAAAGCTGAAATCGGCACTGTCCACATCTCCAGAAGCTGATGCGGACAGTGAGAAGAAAATTATCTACACTTACCAGAATGCTTTTCATGGTGTTGCAGCTAAGTTGACTGAAGGAGAAGCTAAGAAGCTAGAGGCTGAAGAAGGAGTTGTGGCCATATTCCCAGATACAAAGTATGAGCTACACACTACAAGAAGTCCTGCATTCCTCGGGCTTCAACCACAAAAAGCCCCTAACGTGTGGTCAGAAAAGCTTTCGGGCCGTGATGTTATAGTGGGAGTGTTAGATACTGGGATTTGGCCAGAGAGTGAAAGCTTCAAAGATGTAAGCATGGGACCAGTACCTGCTCATTGGAAAGGTGCCTGTGAGATTGGAACAGGATTCACAAAAAGTCACTGCAATAAAAAGGTTGTGGGGGCAAGAGTGTTCTACCATGGATATGAAGCAGCAATTGGTAGAATTAATGAGCAGAAGGAGTACAAATCACCAAGAGATCAAGATGGGCATGGCACTCACACAGCAGCTACAGTTGGTGGCTCTCCTGTGCTTGGGGCTAACCTTCTTGGTTATGCTAATGGCACAGCAAGAGGAATGGCACCAGGTGCAAGGATTGCAGCTTACAAAGTGTGTTGGATTGGTGGGTGCTTTAGCTCAGATATTGTGTCAGCTATTGATAAAGCTGTGGCTGATGGAGTGGATATTCTTTCCATCTCTTTGGGTGGTGGAGTCTCCTCTTATTACCGTGATAGTTTATCTGTTGCTGCATTTGGAGCAATGGAGAAGGGTGTTTTTGTTTCATGTTCTGCAGGAAATGCAGGACCTGATCCTGCCAGCCTCACCAATGTTTCACCATGGATCACCACAGTTGGAGCCAGCACAATGGATAGAGATTTTCCAGCAGAAGTTAAGCTTGGAAATGGTAAGATAGTGACTGGAGTTTCACTCTACAAAGGGCAAAGTGTGCTTTCAATTGAGAAACAATACCCTTTGGTGTACTTGGGGAGCAACTCTAGCAGGGTTGATCCAAGATCCATGTGCTTGGAAGGGACTATGGATCCTAAAGTGGTTTCAGGAAAGATAGTTATATGTGATAGAGGCCTTAGTCCTAGAGTGCAGAAGGGTCATGTGGTGAGAAGTGCAGGAGGGGTGGGAATGATTCTCACAAATACTGAAGCTAATGGAGAAGAACTAGTTGCTGATTGCCATCTCCTTCCAGCAGTTGCAATAGGAAAAAAAGAAGGAAAAGATCTCAAAAGTTATGTCCTATCTAGTCAAAGTGCTACTGCAACTCTAGCTTTTAAAGGTACGAGGTTGGGAATAAGGCCATCTCCTGTAGTGGCAGCATTTTCATCAAGAGGGCCAAATTTTCTCAGCCTTGAAATTCTGAAGCCTGATTTAGTAGCTCCTGGGGTGAAAATTCTTGCTGCTTGGAGTGAGGCCATTGGTCCATCAGGTTTGAAAGTGGACAACAGGAGAGAGAAGTTCAATATACTCTCTGGAACCTCAATGTCATGCCCACATGTGAGTGGTGTAGCAGCCTTTCTCAAAGCCAG 1721 0.4439 MAKTIMGNMGYFFTSYLLVLTMMFSANAQFAKKTYLVQMDKPVMPKAFTNHLEWYSSKLKSALSTSPEADADSEKKIIYTYQNAFHGVAAKLTEGEAKKLEAEEGVVAIFPDTKYELHTTRSPAFLGLQPQKAPNVWSEKLSGRDVIVGVLDTGIWPESESFKDVSMGPVPAHWKGACEIGTGFTKSHCNKKVVGARVFYHGYEAAIGRINEQKEYKSPRDQDGHGTHTAATVGGSPVLGANLLGYANGTARGMAPGARIAAYKVCWIGGCFSSDIVSAIDKAVADGVDILSISLGGGVSSYYRDSLSVAAFGAMEKGVFVSCSAGNAGPDPASLTNVSPWITTVGASTMDRDFPAEVKLGNGKIVTGVSLYKGQSVLSIEKQYPLVYLGSNSSRVDPRSMCLEGTMDPKVVSGKIVICDRGLSPRVQKGHVVRSAGGVGMILTNTEANGEELVADCHLLPAVAIGKKEGKDLKSYVLSSQSATATLAFKGTRLGIRPSPVVAAFSSRGPNFLSLEILKPDLVAPGVKILAAWSEAIGPSGLKVDNRREKFNILSGTSMSCPHVSGVAAFLKA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6852g00001 573 Gene3D - 351 495 - -
Vium6852g00001 573 SUPERFAMILY Subtilisin-like 117 572 IPR036852 GO:0004252|GO:0006508
Vium6852g00001 573 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
Vium6852g00001 573 FunFam subtilisin-like protease SBT1.5 351 494 - -
Vium6852g00001 573 CDD Peptidases_S8_3 115 573 IPR034197 -
Vium6852g00001 573 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 44 573 IPR045051 -
Vium6852g00001 573 ProSiteProfiles Serine proteases, subtilase domain profile. 114 573 - -
Vium6852g00001 573 CDD PA_subtilisin_like 358 487 - -
Vium6852g00001 573 Pfam Peptidase inhibitor I9 34 118 IPR010259 -
Vium6852g00001 573 FunFam Subtilisin-like protease SBT1.5 145 362 - -
Vium6852g00001 573 Pfam PA domain 383 473 IPR003137 -
Vium6852g00001 573 Gene3D Peptidase S8/S53 domain 145 573 IPR036852 GO:0004252|GO:0006508
Vium6852g00001 573 FunFam Subtilisin-like protease SBT1.9 23 118 - -
Vium6852g00001 573 Pfam Subtilase family 143 572 IPR000209 GO:0006508|GO:0008236
Vium6852g00001 573 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Vium6852g00001 573 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Vium6852g00001 573 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
Vium6852g00001 573 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 118 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6852g00001 Vium-Chr6852 5921 8022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6852g00001 32 573 Subtilisin-like Serine Gene Family AT5G51750 69.742 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6852g00001 - - vum:124844232 1116.29