Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6850g00007 ATGCCTCATGATCAGAGAAAAAAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGCGAAGGGAGTAGATACAGAATAGAGGAAGTGATTGGCAAAGGAAGCTATGGTGTTGTTTGCTCTGCTTATGATACACACACAGGAGAGAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACACGTTTCTGATGCCACCCGCATCCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTATTACCTCCTTCTAGGAGGGAGTTCAAAGATATATATGTTGTATTTGAACTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTGCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTAAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTGAAGCCGAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCTACACGGTGGTATAGGGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCTGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACCGGGAAACCTCTTTTCCCAGGAAAGAATGTTGTCCATCAATTAGACCTCATGACTGATTTTCTTGGAACACCCTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGAAGATACTTGAGTAGTATGCGCAAGAAGAAGCCAGTTCCTTTCTCTCAAAAGTTTCCCAATGTAGATCCCCTTGCTCTTCGGGTTTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGACGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAAGTTGAGAGAGAGCCTTGTTCTCAGCCAGTTACCAAGATGGAGTTTGAATTTGAGAGACGTAGAATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAATACCATCCAAAGATGTTAAAAGAACATCTAAACGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCCGTGGACCATTTCAAAAAACAATTTGCATATCTTGAAGAGCATTATGGAAAAGATGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCATGTGTGTTGTATTCAGATAACGAAAGGCAAAATATGGCAGTGGTTGCGGATGATCTCTCCAAGTGTAGCATCAAAGAAGTTGAGAAGCCAGCAATAGACAAGACCGGTGGTATCCCAATGACCAGGCTTCCTTTACCAGCTCCTCAAAATATTAAAGGTGTTGCTGCACGTCCAGGAAAAGTTGTAGGTTCAGTACTGCATTACAACAACAGTGGGGTGGCCGGGACTGAGCAGCGGAAGACGGGTAAAAACTCATCTGTTTCAGCCAAGTATGCTGCTCAAAGCTGTTCATATCCAAGAAGAAACCCAAACTGTAAAATTGAGAGGGCAGTTGAAGGAATTGAAGGTGCTAATGGACTTCAGACAAAGCCTCAATATCTAGCACGCAAAGTTGCTGCTGCTCAAGGGGGACCTGGTGGTAGTTGGTATTGA 1677 0.4228 MPHDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTAEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTADEALADPYFKGLAKVEREPCSQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLNGEEPTGFMYPSAVDHFKKQFAYLEEHYGKDGTVTPPERQHASLPRPCVLYSDNERQNMAVVADDLSKCSIKEVEKPAIDKTGGIPMTRLPLPAPQNIKGVAARPGKVVGSVLHYNNSGVAGTEQRKTGKNSSVSAKYAAQSCSYPRRNPNCKIERAVEGIEGANGLQTKPQYLARKVAAAQGGPGGSWY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6850g00007 558 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium6850g00007 558 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Vium6850g00007 558 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 360 - -
Vium6850g00007 558 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6850g00007 558 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6850g00007 558 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vium6850g00007 558 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6850g00007 558 FunFam Mitogen-activated protein kinase 111 339 - -
Vium6850g00007 558 CDD STKc_TDY_MAPK 24 361 - -
Vium6850g00007 558 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vium6850g00007 558 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Vium6850g00007 558 FunFam Mitogen-activated protein kinase 15 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6850g00007 Vium-Chr6850 27928 34107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6850g00007 1 558 MAP Kinase Gene Family AT5G19010 77.875 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium6850g00007 Pkinase 8.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6850g00007 - - gmx:100799442 1035.02