Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6848g00006 ATGGACAGAAAAGAGTTGTTTTTTGTTACTGTTCTCATAATCTCTAAGCAGTTCAACATCATGGAATATGTAAAAGAGTCAAAACCCTGCAGACAGTACAAAATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACCGATGAAGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGACCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGACAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACTACAGCAGGTTTTTGGAAAGCAACTGGAAGAGACAAATCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCACGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCGGATGTTCAGGAAGATGGATGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGAACTTAACCCACATGAGAACAAGTGGTCCTTGCCATGTTCTGGAGCCAAAACATCATATGCAAGGAGGATTATATGACTACAACTTTGATGGCACAATGCAGCTTCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAAGCAGTAGTTGCTTGGGCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACCACTAGTGGCTGTGGACTGAATCTTATGCAACAACAGGGAGAGAGGTTCAGTGGTGATTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGCCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTTCTGTTGCCACTTCAGCTCAGAAATTCCCATTCCATTATCTTGGCTGTGACACCCATGATATCATGAAATTTTCCAAGTAG 1077 0.4364 MDRKELFFVTVLIISKQFNIMEYVKESKPCRQYKMMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEENLTHMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPSSSCLGTSMNAMDILECSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAATSVATSAQKFPFHYLGCDTHDIMKFSK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6848g00006 358 FunFam NAC domain-containing protein 53 197 - -
Vium6848g00006 358 Pfam No apical meristem (NAM) protein 45 173 IPR003441 GO:0003677|GO:0006355
Vium6848g00006 358 Gene3D NAC domain 53 198 IPR036093 GO:0003677|GO:0006355
Vium6848g00006 358 SUPERFAMILY NAC domain 32 193 IPR036093 GO:0003677|GO:0006355
Vium6848g00006 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 297 - -
Vium6848g00006 358 ProSiteProfiles NAC domain profile. 44 193 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6848g00006 Vium-Chr6848 100971 103759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6848g00006 40 358 NAC Transcription Factor Family AT1G79580 52.926 6.75e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6848g00006 NAM 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6848g00006 - - vun:114178728 660.603