Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6848g00005 ATGGACAGAAAAGAGTTGTTTTTTGTTACTGTTCTCATAATCTCTAAGCAGTTCAACATCATGGAATATGTAAAAGAGTCAAAACCCTGCAGACAGTACAAAATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACCGATGAAGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGACCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGACAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACTACAGCAGGTTTTTGGAAAGCAACTGGAAGAGACAAATCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCACGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCGGATGTTCAGCAGGAAGATGGATGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGAACTTAACCCACATGAGAACAAGTGGTCCTTGCCATGTTCTGGAGCCAAAACATCATATGCAAGGAGGATTATATGACTACAACTTTGATGGCACAATGCAGCTTCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAAGCAGTAGTTGCTTGGGCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACCACTAGTGGCTGTGGACTGAATCTTATGCAACAACAGGGAGAGAGGTTCAGTGGTGATTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGCCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTTCTGTTGCCACTTCAGCTCAGAAATTCCCATTCCATTATCTTGGCTGTGACACCCATGATATCATGAAATTTTCCAAGTAG 1080 0.437 MDRKELFFVTVLIISKQFNIMEYVKESKPCRQYKMMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQQEDGWVVCRVFKKKNQNRGFQQEIEEEENLTHMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPSSSCLGTSMNAMDILECSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAATSVATSAQKFPFHYLGCDTHDIMKFSK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6848g00005 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 297 - -
Vium6848g00005 359 ProSiteProfiles NAC domain profile. 44 194 IPR003441 GO:0003677|GO:0006355
Vium6848g00005 359 FunFam NAC domain-containing protein 53 198 - -
Vium6848g00005 359 Gene3D NAC domain 53 199 IPR036093 GO:0003677|GO:0006355
Vium6848g00005 359 Pfam No apical meristem (NAM) protein 45 173 IPR003441 GO:0003677|GO:0006355
Vium6848g00005 359 SUPERFAMILY NAC domain 32 194 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6848g00005 Vium-Chr6848 100971 103761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6848g00005 40 359 NAC Transcription Factor Family AT1G79580 52.785 4.10e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6848g00005 NAM 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6848g00005 - - vun:114178728 655.981