Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6848g00003 ATGATGCCAAGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACCGATGAAGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGACCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGACAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACTACAGCAGGTTTTTGGAAAGCAACTGGAAGAGACAAATCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCACGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCGGATGTTCAGCAGGAAGATGGATGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGAACTTAACCCACATGAGAACAAGTGGTCCTTGCCATGTTCTGGAGCCAAAACATCATATGCAAGGAGGATTATATGACTACAACTTTGATGGCACAATGCAGCTTCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAAGCAGTAGTTGCTTGGGCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACCACTAGTGGCTGTGGACTGAATCTTATGCAACAACAGGGAGAGAGGTTCAGTGGTGATTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGCCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTTCTGTTGCCACTTCAGCTCAGAAATTCCCATTCCATTATCTTGGCTGTGACACCCATGATATCATGAAATTTTCCAAGTAG 978 0.4468 MMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKSIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQQEDGWVVCRVFKKKNQNRGFQQEIEEEENLTHMRTSGPCHVLEPKHHMQGGLYDYNFDGTMQLPQLFSPESAVAPSSSCLGTSMNAMDILECSQNLLRLTTSGCGLNLMQQQGERFSGDWSFLDKLLASHHAMDHQHHPQSKCNPPTHQAATSVATSAQKFPFHYLGCDTHDIMKFSK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6848g00003 325 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Vium6848g00003 325 FunFam NAC domain-containing protein 19 164 - -
Vium6848g00003 325 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Vium6848g00003 325 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Vium6848g00003 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 266 - -
Vium6848g00003 325 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6848g00003 Vium-Chr6848 100971 104250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6848g00003 6 325 NAC Transcription Factor Family AT1G79580 52.785 1.98e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6848g00003 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6848g00003 - - vun:114178728 655.981