Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6846g00001 AGGATGGGACTTATTCTTGCAGACATTTCCAATGGAGCTGAGAACATTCCTGTATCACTTGTCAATGAAGTTGATAATGTGAAGGCGCCTACTTATTTCAATTATTTCCATTCTCTTAGACACCCTAAATCATTCAGTTTGATGCAGCCTTCAAATGGATGCACCTGTACTAAATCATGTGTTCCTGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCTTATATTGGAAAAGGTGTTCTGGTGAGCCGGATGCAATTGGTTCATGAATGTGGCCCTACATGTCAGTGTTTTCCTAACTGCAAAAATAGAGTATCCCAAACCGGTTTAATGCACCCCATGGAAGTGTTCAAAACGAAGGATAGAGGGTGGGGTCTTCGGTCTCTGGATCCTATTCGCTCTGGTACCTTCGTTTGTGAATATGCTGGAGAAGTTGTTGATAGGGCCAAAGTAAGTCAGCTTGTGAGTGAAGGAAATGAGTATGTTTTTGATTCAACCCGGATTTATGGTCAATTCAAGTGGAATTATGAGCCTAAGCTTTTGGAAGAAGTCAATCCCAATGAATCTAGTGAGCATTATGCCATGCCGTATCCTTTGACCATAAGTGCCAAGAATTTTGGGAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCTGTGGTATATGAAGAAAACAACCAATCGTACGTCCATGTTGCCTTCTTTGCTCTCAGACACATTCCACCAATGACAGAGTTAACATATGACTATGGAGTTGCCCGATCTGATCATGCTGAGGGTATCCGTGCAGTCAAAGGGAGAAAGAAATGTTTATGCCGATCATCGAAATGCCGAGGTTCTTATGGTTAA 879 0.4187 RMGLILADISNGAENIPVSLVNEVDNVKAPTYFNYFHSLRHPKSFSLMQPSNGCTCTKSCVPGDLNCSCIRRNEGDFPYIGKGVLVSRMQLVHECGPTCQCFPNCKNRVSQTGLMHPMEVFKTKDRGWGLRSLDPIRSGTFVCEYAGEVVDRAKVSQLVSEGNEYVFDSTRIYGQFKWNYEPKLLEEVNPNESSEHYAMPYPLTISAKNFGNVARFMNHSCSPNVFWQPVVYEENNQSYVHVAFFALRHIPPMTELTYDYGVARSDHAEGIRAVKGRKKCLCRSSKCRGSYG 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6846g00001 292 ProSiteProfiles SET domain profile. 116 261 IPR001214 GO:0005515
Vium6846g00001 292 SUPERFAMILY SET domain 15 289 IPR046341 -
Vium6846g00001 292 ProSiteProfiles Pre-SET domain profile. 52 113 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium6846g00001 292 ProSiteProfiles Post-SET domain profile. 276 292 IPR003616 -
Vium6846g00001 292 Pfam Pre-SET motif 9 108 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium6846g00001 292 Pfam SET domain 127 261 IPR001214 GO:0005515
Vium6846g00001 292 Gene3D SET domain 1 270 IPR046341 -
Vium6846g00001 292 SMART preset_2 6 100 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium6846g00001 292 SMART set_7 116 267 IPR001214 GO:0005515
Vium6846g00001 292 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6846g00001 Vium-Chr6846 6 1926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6846g00001 1 292 Su(var)3-9 homologs AT1G73100 57.192 1.36e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium6846g00001 SET 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6846g00001 K24405 - gmx:100812173 548.125