Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6845g00003 ATGGACTACGGAAGACTTGGTCCCTCTCAGCCCATCAATCCAAGATCTTCCGGTAAGAAGAAGATTGCCTTGCTGTCACTCTTTGGAGTCATATTAATCGCTGCATCGGCGGTTACGGCCTTTGCGCTACTCTCTCCAACCGGTACAAAAGCGGATGGTTCAAGGCTTCGTCGCAAGCCTACACAGGCCATTTCACGCACGTGCAGCAAAACACGATTTCAGACAGTGTGCGTCAATTCGCTGCTGGACTTTCCCGGATCCCAGGCTGCATCCGAGAATGACCTGCTTCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAGGGCGCTCTACACTTCCGCCGCAATTTCCTACGCCACCATGGATCCACGCGTCCGCGCCGCCTACGACGACTGCCTCGAACTCCTCGACGATTCCGTCGACGCGCTTGCGCGCTCCCTCAGCACCGTCTCCCTCGGTGCCGTTGGCTCCGCCAACGAAGACGTCCTCACCTGGCTCAGCGCCGCCCTCACCAACCAGGACACCTGCGCGGAGGGCTTTGCCGACGCCGCCGGTCCGGTGAAGGACCAGATGAGTAACAACCTCAAGGACTTGTCGGAGCTCGTCAGCAATTGCCTCGCCATTTTCTCGGCAGCGGCCAACGGCGACGACTTCTCGGGCGTTCCCATTCAGAACAGGAGACGGTTGATGACAATGCGAGCCGATAATTTCCCGAGATGGTTGAATCGACGAGATAGGAGATTGTTGAACTTGCCTCTGTCGGCGATACAAGCCGATGTCGTGGTTTCCAAGGACGGTAACGGAACCGTTAAGACCATCGCCGAAGCCATTAAGAAGGTCCCGGAATACAGTTCACGCCGCTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGGAGAATTTAAAGGTGGGGAGGAAGAAAACAAATGTGATGTTCGTAGGGGACGGTAAGGGGAACACCGTCATCACAGGAGGGAAAAATTATTATAACAACCTCACCACATTTCACACGGCATCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCCAAGGACATCACATTCGAGAACTACGCCGGACCAGAGAATCACCAAGCTGTGGCTCTCCGTATCGGAGCGGATCACGCGGTGGTGTACCGCTGCAACGTCATCGGATACCAGGACACAATGTATGTCCATTCCAACCGTCAATTTTTCCGCGAATGCGACATTTACGGAACCGTCGACTTCATATTCGGCAATGCTGCCGTGGTGTTCCAGAACTGCAGTCTCTGGGCCCGCAAGCCAATGGCCCAACAGAAGAACACCATCACGGCCCAGAATCGCAAAGACCCGAATCAGAACACGGGCATTTCCATCCACAACTGTCGGATCCTTGCCACATCGGATCTAGAAGCATCCAAGGGTAGTTTTTCCACTTATCTCGGTCGTCCGTGGAAACTTTATGCCAGAACCGTCTACATGATATCCTACATAGGGGATCACGTGCACCCACGTGGGTGGCTGGAGTGGAACACGTCCTCGTTTGCTTTGGACACGTTATACTATGGTGAATACATGAATTCTGGGCCGGGTGCAGCCTTGGGGCAACGCGTGAAATGGGTCGGATATCGGGCCATCAATTCCTCCGCTGAAGCTTCTAAATTCACGGTAGGGCAATTCATATCAGGCTCATCGTGGTTGCCGTCTACCGGAGTTTCATTCGTAGCTGGGTTATCAACTTGA 1728 0.5388 MDYGRLGPSQPINPRSSGKKKIALLSLFGVILIAASAVTAFALLSPTGTKADGSRLRRKPTQAISRTCSKTRFQTVCVNSLLDFPGSQAASENDLLHISFNVTLQHFSRALYTSAAISYATMDPRVRAAYDDCLELLDDSVDALARSLSTVSLGAVGSANEDVLTWLSAALTNQDTCAEGFADAAGPVKDQMSNNLKDLSELVSNCLAIFSAAANGDDFSGVPIQNRRRLMTMRADNFPRWLNRRDRRLLNLPLSAIQADVVVSKDGNGTVKTIAEAIKKVPEYSSRRFIIYVRAGRYEEENLKVGRKKTNVMFVGDGKGNTVITGGKNYYNNLTTFHTASFAASGSGFIAKDITFENYAGPENHQAVALRIGADHAVVYRCNVIGYQDTMYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLWARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATSDLEASKGSFSTYLGRPWKLYARTVYMISYIGDHVHPRGWLEWNTSSFALDTLYYGEYMNSGPGAALGQRVKWVGYRAINSSAEASKFTVGQFISGSSWLPSTGVSFVAGLST 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6845g00003 575 FunFam Pectinesterase 254 573 - -
Vium6845g00003 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 213 IPR035513 -
Vium6845g00003 575 NCBIfam pectinesterase inhibitor domain 38 211 IPR006501 GO:0004857
Vium6845g00003 575 SMART PMEI_2 59 209 IPR006501 GO:0004857
Vium6845g00003 575 PANTHER PECTINESTERASE 35 563 - -
Vium6845g00003 575 Pfam Pectinesterase 260 558 IPR000070 GO:0030599|GO:0042545
Vium6845g00003 575 Gene3D - 254 573 IPR012334 -
Vium6845g00003 575 FunFam Pectinesterase 60 213 - -
Vium6845g00003 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 211 IPR035513 -
Vium6845g00003 575 CDD PMEI-like_3 68 215 - -
Vium6845g00003 575 Pfam Plant invertase/pectin methylesterase inhibitor 63 209 IPR006501 GO:0004857
Vium6845g00003 575 SUPERFAMILY Pectin lyase-like 255 572 IPR011050 -
Vium6845g00003 575 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6845g00003 Vium-Chr6845 21659 26009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6845g00003 1 574 Carbohydrate Esterase AT5G53370 65.424 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6845g00003 - - gmx:100808236 961.059