Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6842g00004 ATGCTGAAATTGAATCCAAACGAAAGCCAAACAGGGTTTGGGCTTTTCTGGGACTTGGACAATAAACCACCGATGCCAATCCCACCTTTTGATGTTGCCAATAAGCGATGAATAGCTGTTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAACTGTTGTATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGTAAAAGGATAAACCAGATTGAGTCTGCTAGAGGGAACAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAAGTGGGCTTGGTGTTGGCACCATGACGCTCAAACGTGCTGGGTTTTCCGCGTGTCAAACTGTGTTGGATAAGCCGCAGGCTGCAGATCGAGCATTGCAAGCCACCATTGTGGATGTCATGAGGATCCATAGGGCGGGTTGGTGTGTGGTTCTTTCTGTGTCTGATGATTCTGATTTTGTTGATGGGGATAAAGGAGGCAAGGCTCGATGTCTGAAGACGGTTGTGTCGTAGGGGAATATTGATGATGGTGTCCTTGAAGAGGCCTGCGATACTGCACTGCTTTCTTCGTAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTGCTGCGGTTGTGAAAAACTGGAATGACTCGTATGATTTTGGTTTAGAGTGGACATATAACCCTGGATGCAGATAA 867 0.4533 MLKLNPNESQTGFGLFWDLDNKPPMPIPPFDVANKRXIAAXSFGIVRYMVAYANSHTFSHVPQSVREKRKERELLYRLENKGVIKPNEPYRCRVCGRKFHTNDKLVNHFKQLHEREHGKRINQIESARGNRRVKLVAKYSMKMEKYKKAASAILTPKSGLGVGTMTLKRAGFSACQTVLDKPQAADRALQATIVDVMRIHRAGWCVVLSVSDDSDFVDGDKGGKARCLKTVVSXGNIDDGVLEEACDTALLSSWXEILMGKAKKQAAAVVKNWNDSYDFEXLEWTYNPGCR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6842g00004 291 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Vium6842g00004 291 Gene3D Classic Zinc Finger 62 152 - -
Vium6842g00004 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 118 IPR013087 -
Vium6842g00004 291 SMART c2h2final6 90 113 IPR013087 -
Vium6842g00004 291 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 7 287 - -
Vium6842g00004 291 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6842g00004 4 289 C2H2 Transcription Factor Family AT4G12240 55.245 1.24e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6842g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6842g00004 - - vum:124844196 551.592