Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6840g00005 ATGCATAGTCAACAAACAGACAAAGAGGAAGACGATGAAGGCCCCCCACCGGGGTGGCAACCAATCACAAATCATCCGCCGCCACCGCAACAGCAACCGCCGCCGCAACCCCAACCGCAACCGCAACCGCAACCACCACCTCCTAGTCCATGTGGTTGGGGTCAGATGGTCTGCGGTTCTTGTCACCGCCTGCTTTCTTATCCACGAAGTGCCAAACATGTTAAATGTTCATGCTGTGAGGCTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTGAGTGTGGCAGTTGTGCGGTATTGCTAATGTACCCATTTGGTGCTTCACATGTTAGGTGTTCCTCATGCCAATTTGTGACAGAAATTGGGGCACACAACGAGCGGCCTCCATGGTCTATACAACAAAGGAAACCAGTTCCTGCAAAATCTGGTTGTTAG 441 0.5102 MHSQQTDKEEDDEGPPPGWQPITNHPPPPQQQPPPQPQPQPQPQPPPPSPCGWGQMVCGSCHRLLSYPRSAKHVKCSCCEAVNIVLEADQVGQVECGSCAVLLMYPFGASHVRCSSCQFVTEIGAHNERPPWSIQQRKPVPAKSGC 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6840g00005 146 NCBIfam zinc finger domain, LSD1 subclass 93 121 IPR005735 -
Vium6840g00005 146 NCBIfam zinc finger domain, LSD1 subclass 55 85 IPR005735 -
Vium6840g00005 146 MobiDBLite consensus disorder prediction 1 50 - -
Vium6840g00005 146 PANTHER PROTEIN LSD1 27 144 IPR040319 -
Vium6840g00005 146 MobiDBLite consensus disorder prediction 1 15 - -
Vium6840g00005 146 Pfam LSD1 zinc finger 96 120 IPR005735 -
Vium6840g00005 146 Pfam LSD1 zinc finger 58 82 IPR005735 -
Vium6840g00005 146 MobiDBLite consensus disorder prediction 19 50 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vium6840g00005 zf-LSD1 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6840g00005 - - gmx:100780865 224.942