Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6835g00001 ATGCTTCCCTTCCGGAGATTCTACGGCTTCCAGAGTTGGCTAGACCACGACTCTACCCACGTCCCCAACACTTTCATTAAACGGTCAGTGGAGTTCGACGGCGCCAGATCAAAAGCCGACCGCAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCCGAGAGGAGACGCAGGCAGAGAATCAACTCTCACCTATCCACCTTACGATCCCTCCTTCCTAACGCCGCCAAGTCGGATAAAGCGTCGTTGCTGGCGGAAGTTGTTGAGCACGTGAAACGGTTAAAGAAGCAGGCCGCTGAAGTGGCGTGCGTGGACGGCGGCGAACCAGGTGCGGTTCGGTCTGAGGCGTGGCCGCTTCCCGGGGAGTGCGACGAGGCGACGGTGAGTTGGTGCGAGGGGGAGGCGAATAGGGTAAAGGCGACGGTGTGCTGTGAGGACCGGGCCGGTCTGAACCGCGACGTGACACGGGCAATCCGGTCGGTTCAGGCAAAGCCGGTTCGCGCGGAAATGATGACGGTTGGGGGAAGGATGAAGAGTGTGGTGGTGGTGGAGTGGGGTGAAGAGGAGGTGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCCGTAGTGGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCTATTGTTTTGGGCCAGAAACGGGGTAGGGATTGTTGCGGTTCGCCTACTTCTTCTTGA 702 0.5897 MLPFRRFYGFQSWLDHDSTHVPNTFIKRSVEFDGARSKADRKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLKKQAAEVACVDGGEPGAVRSEAWPLPGECDEATVSWCEGEANRVKATVCCEDRAGLNRDVTRAIRSVQAKPVRAEMMTVGGRMKSVVVVEWGEEEVEVGALERALKAVVENRALVGFGMGPIVLGQKRGRDCCGSPTSS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6835g00001 233 Gene3D - 39 103 IPR036638 GO:0046983
Vium6835g00001 233 Gene3D - 135 208 - -
Vium6835g00001 233 SMART finulus 51 100 IPR011598 GO:0046983
Vium6835g00001 233 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Vium6835g00001 233 SUPERFAMILY ACT-like 138 204 IPR045865 -
Vium6835g00001 233 PANTHER TRANSCRIPTION FACTOR BHLH30 29 224 IPR045847 GO:0003700|GO:0006355
Vium6835g00001 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Vium6835g00001 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6835g00001 Vium-Chr6835 25771 27459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6835g00001 29 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 40.094 2.91e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium6835g00001 HLH 7.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6835g00001 - - gmx:100816394 357.836