Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium682g00007 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATATGTGCTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGCCCACCTGAGAATGATCCTTACGCGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTGGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCGATTTTGCTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCCGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACCTGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACAGACCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCGTCTTATGCACGGGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAGCTTAAAGACCTTGAACTACGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATATTGCACCATGTGCCTGATGCTAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAACGCCCCTTTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTAGAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1641 0.4327 MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKIESNSYVLRPQHSLEIASGPPENDPYAILDLDDLSHKMRELETAMLGPNVDMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIILHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGHYTLEEKDGALFLGWKNQVLIASCAWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium682g00007 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Vium682g00007 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 541 IPR005202 -
Vium682g00007 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium682g00007 Vium-Chr682 138351 141534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium682g00007 1 546 GRAS Transcription Factor Family AT1G50600 56.159 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium682g00007 GRAS 1.2e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium682g00007 - - gmx:100785400 959.133