Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium682g00004 ATGGACGCCGCCGAAGCCCTCTCCGACGATCCAAATCGACCTGGGTCCAGGCCCAATTCCGCCCCAGACGCTGCTCCGGCCGGCGGTGGCGCGAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTATTTATGCTTCATCAAACAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTATTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCATAGTAGACCAAATATGGTTCCTGCAGACCCTAACAATCATGCAAGTGAAAAGTCCACTCAAATAGATGAAGGAAAAACTCAACCTTTTGATTCATCACTATTAGTAAAAAGTGAGATAGTAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAACAAATGGGCTTCACGCATCAAATATTGACAATAAAGGAAGTGGACTTTCCGTTGCAGCTGATCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAGTTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCTAGTGGAACTATCATGACCATGCAAGAAGAGAGGTCTGATAAAGCTTCTTTCCGAGATGAGAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGACTGACAGTACTCCGGAGTTATCGCCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAGCAATGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCCGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACATAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGAGATTGCAGGATCAGCAAGTGCTGCTAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGCTTCGGAAAACACACCAAACAGTCAAGGGAGAATGATGCTTCCTGAATTTGGGGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGGCACCGGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCGTAA 1713 0.4594 MDAAEALSDDPNRPGSRPNSAPDAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQTAHASVTSAASASFPVTTASFNTNTIDDRKPSFFEFKPHSRPNMVPADPNNHASEKSTQIDEGKTQPFDSSLLVKSEIVVPSNELSLSSPVQGDLDELNPRSNITNGLHASNIDNKGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTIMTMQEERSDKASFRDEKGSNICGQVSHPAETDSTPELSPAATNDGDPEGTGFFSNRSNDEVDDDDPLSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHEIAGSASAASGQTRIRPEESDTISLDLGMGISPASENTPNSQGRMMLPEFGDSQAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSRENPSDSSTSLNHSAYPCPQNVGRILMGP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium682g00004 570 MobiDBLite consensus disorder prediction 538 558 - -
Vium682g00004 570 MobiDBLite consensus disorder prediction 538 570 - -
Vium682g00004 570 MobiDBLite consensus disorder prediction 136 151 - -
Vium682g00004 570 SUPERFAMILY WRKY DNA-binding domain 212 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 ProSiteProfiles WRKY domain profile. 209 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 ProSiteProfiles WRKY domain profile. 382 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 SUPERFAMILY WRKY DNA-binding domain 379 447 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 484 IPR044810 GO:0003700
Vium682g00004 570 MobiDBLite consensus disorder prediction 308 324 - -
Vium682g00004 570 SMART WRKY_cls 214 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 SMART WRKY_cls 387 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 MobiDBLite consensus disorder prediction 123 151 - -
Vium682g00004 570 FunFam WRKY transcription factor 33 374 440 - -
Vium682g00004 570 MobiDBLite consensus disorder prediction 1 33 - -
Vium682g00004 570 Pfam WRKY DNA -binding domain 388 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 Pfam WRKY DNA -binding domain 215 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 MobiDBLite consensus disorder prediction 288 354 - -
Vium682g00004 570 Gene3D WRKY domain 206 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 Gene3D WRKY domain 372 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium682g00004 570 FunFam WRKY transcription factor 204 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium682g00004 Vium-Chr682 121125 130573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium682g00004 36 570 WRKY Transcription Factor Family AT4G26640 56.410 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium682g00004 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium682g00004 - - gmx:100781491 959.133