LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6825g00011	ATGGGAAGAACTCCTTGCTGCAGTCACGAGCAACTCAGAAAAGGTGCCTGGACTGTTCAAGAAGACCAGAAACTCATTGCTTACATTCAGAAACATGGCACTGGAAGCTGGCGTACCCTTCCTCAGAAAGCTGGTCTTCAGAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCAGACATTAAGAGAGGAAAATTGAGTCCGGAAGAAGAGCAGAAGATTATAAAACTTCAGGCTGTTCTTGGCAACAGGTGGTCAAGCATTGCAAAGCATTTACCAATGCGAACTGATAACGAAATAAAAAACTATTGGAACTCGTATCTGAAAAGGCACTATGAAAAGAATGATGCGTATCCATCGAGTTCAAAACCAATTAGCACTGCTAGTTCCACAGAATCAAAATCCAGTGACTTGTGCATGGTTCCATCAAAGGAAACTGATTGCCATGGCCCAAATGCCACTCCACACCAATCTAATCAGTCCAAATTACCAAAGACAATGTCATCCTCAACTCAGCTTCTCAACAGAGTTGCTAGTAAAATTCTTTCATCTGGGTACCTAGAAGCAATAAAATCATATCAACATGTTGTTGCTGGGAAAAGCAACGGTGATAATAGTGTGGTTAAAACCGGAATTGAAGTAGAAAAGGAGGGTAACAGAGACCCCCTTGTGCCTAATTTGACCTCATCAAATCATTCAGTAACTTGTTCTGCTCAGCTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCACGGTCTTGAATCTGCAAAAGCTGTTTTTTCAAAATTACTGGAAAGCAGTGAAAAAGGAGACAGTGGTAGTGATGGTAGCTTTATTAGCAGTGATCAAATTGGAGAGTGTTTGAATGCTCTAAGCCCTTTTGAGGATGGACCGCACATAAAGAACGTGGTTGGGTCCCCTTCTAGTCCTTCCCTCATATTCAATCAGGTGACCACACCCTCATGCTTTTCAGACAATGAAGATAATTGGCAAAACGTTTCATCTAACTACGTTTCATTCAGACATTGTGCTCCAACTGCTGCTGAATGCAGTGTTTCTGAACTAAACTTGGGTGAGTCTTCTAGTTCAACGTCATGTTTCCTGTTTGAAAATACTGATCTCGGAATCTGTGACGATGAAATAAGCAAGTACATTCAGTATTTGTAA	1185	0.4152	MGRTPCCSHEQLRKGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRHYEKNDAYPSSSKPISTASSTESKSSDLCMVPSKETDCHGPNATPHQSNQSKLPKTMSSSTQLLNRVASKILSSGYLEAIKSYQHVVAGKSNGDNSVVKTGIEVEKEGNRDPLVPNLTSSNHSVTCSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGDSGSDGSFISSDQIGECLNALSPFEDGPHIKNVVGSPSSPSLIFNQVTTPSCFSDNEDNWQNVSSNYVSFRHCAPTAAECSVSELNLGESSSSTSCFLFENTDLGICDDEISKYIQYL	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6825g00011	394	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Vium6825g00011	394	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	216	-	-
	Vium6825g00011	394	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Vium6825g00011	394	CDD	SANT	16	61	IPR001005	-
	Vium6825g00011	394	FunFam	MYB-related transcription factor	13	66	-	-
	Vium6825g00011	394	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Vium6825g00011	394	Gene3D	-	69	142	-	-
	Vium6825g00011	394	Gene3D	-	14	66	-	-
	Vium6825g00011	394	FunFam	MYB transcription factor	69	140	-	-
	Vium6825g00011	394	MobiDBLite	consensus disorder prediction	154	169	-	-
	Vium6825g00011	394	SMART	sant	66	114	IPR001005	-
	Vium6825g00011	394	SMART	sant	13	63	IPR001005	-
	Vium6825g00011	394	CDD	SANT	71	112	IPR001005	-
	Vium6825g00011	394	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Vium6825g00011	394	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Vium6825g00011	394	MobiDBLite	consensus disorder prediction	120	169	-	-
	Vium6825g00011	394	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Vium6825g00011	394	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Vium6825g00011	394	MobiDBLite	consensus disorder prediction	123	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6825g00011	Vium-Chr6825	150771	153339	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6825g00011	1	185	MYB Transcription Factor Family	AT1G74080	54.595	2.44e-61	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium6825g00011		Myb_DNA-binding	1.3e-14	CL0123