Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6825g00010 ATGGAAAACGTTTCGGTTCTGTGTAAGGAAGAGGTTCCGATGGATTTGCCTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTACTCATTACCTTTACAGAAAGGTAACGGAGACAAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTAAACAGGTCTGAACCTTGGGATTTGCCATGGAAGGCCAAAATGGGAGAGAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAGTATCCAACCGGTTTGAGGACGAACAGGGCCACTGAAGCAGGATACTGGAAGGCCACAGGGAAAGACAAAGAGATCTTCAGAGGAAAATCTCCTGTGGGAATGAAGAAAACTTTGGTTTTCTACAAAGGAAGGGCCCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAATATAGACTTGAGGGTAAATTCTCTGTCCCCAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTCCAGAAGAGTTCGGGTGGGAAGAAGACTCATATTGATGGGATAATGATGATGGACTCTTACGGAAACGAATTGGGTTCATCTGCTTTGCCACCTCTTACTGATTCCTCACCTTCCATTGGCAACACCAAAGCACTGAGTGTGACTGAACAGGTTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAGGGATCTTCGATTCCTTCAGCAACATCAACGTCATCAACAACAACAACGCCCTTTATGGGGTTTCTTCAAACCATTCATTCTACTCCACTCAAGGGTTTCAACTTCAGGCTCCACCAACGTTGCCTTCACCCGGTTCTTCAAACCATTACCTCAGATCCTTCTTTAACAACCATGGAAAAGGATCATTCTTGAGGAATGGCTTTGAACCAGAGACGGAAATGGTCAGTGTCTCACAGGAAACAGGTGTTTCTACTGAAGTGAACGCAGAAACCTCTTCGGTTGTGTCAAATCTTGAGATGGGGAATAGACTCTTTGAGAATCGAAACAACCCAATTGGTTCAGCTGCACCAGTGGACCTTGCTAGCTTGTGGAACTACTGA 1065 0.4554 MENVSVLCKEEVPMDLPPGFRFHPTDEELITHYLYRKVTETNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLEGKFSVPNLPKTAKNEWVICRVFQKSSGGKKTHIDGIMMMDSYGNELGSSALPPLTDSSPSIGNTKALSVTEQVYVPCFSNPIDVPRGIFDSFSNINVINNNNALYGVSSNHSFYSTQGFQLQAPPTLPSPGSSNHYLRSFFNNHGKGSFLRNGFEPETEMVSVSQETGVSTEVNAETSSVVSNLEMGNRLFENRNNPIGSAAPVDLASLWNY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6825g00010 354 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Vium6825g00010 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 251 - -
Vium6825g00010 354 SUPERFAMILY NAC domain 14 166 IPR036093 GO:0003677|GO:0006355
Vium6825g00010 354 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Vium6825g00010 354 FunFam NAC domain-containing protein 100-like 25 170 - -
Vium6825g00010 354 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6825g00010 Vium-Chr6825 113551 115473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6825g00010 14 354 NAC Transcription Factor Family AT5G07680 58.358 3.09e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6825g00010 NAM 2e-39 No_clan