Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6825g00003 ATGGTGTTTTTGGGGCTTCTCTTGCTGGGATTCCTTTCTCTGGCTTCACCTCTCTCTTCTGCTTCTGATTATGGTTGGATGAATGCTCATGCAACCTTTTATGGAGGGGGTGATGCTTCTGGCACTATGGGTGGAGCATGCGGGTATGGGAACCTGTATAGAGAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAATTTGCGGCGCATGTTTCGAGATTAGGTGTGTTGATGATAAGAATTGGTGTCTTCCAGGGTCAGTTGTGGTCACTGCAACCAATTTCTGTCCCCCAAACAATGCCCTCCCAAACACTGCAGGAGGATGGTGCAACCCTCCCCTTCACCATTTCGACCTTTCTCAACCTGTCTTCCAACAAATTGCTCAATACAGAGCTGGAATAGTACCCGTTGCTTACAGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAGTCCTAATCACAAACGTGGGAGGTGCTGGTGATGTTCATGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAACCTATGACCAGAAACTGGGGACAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGAGGGACGCACCGTGGTCTCTTACAATGTTGCACCGCCAAGTTGGTCCTTTGGCCAAACTTTCAACAGCGGCAACCAATTCGTTTAA 753 0.4781 MVFLGLLLLGFLSLASPLSSASDYGWMNAHATFYGGGDASGTMGGACGYGNLYREGYGTNSAALSTALFNNGLICGACFEIRCVDDKNWCLPGSVVVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVHGVSIKGSRTNWQPMTRNWGQNWQSNTYLNGQSLSFKVTTSEGRTVVSYNVAPPSWSFGQTFNSGNQFV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6825g00003 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Vium6825g00003 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vium6825g00003 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Vium6825g00003 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Vium6825g00003 250 SUPERFAMILY Barwin-like endoglucanases 11 174 IPR036908 -
Vium6825g00003 250 FunFam Expansin 17 152 - -
Vium6825g00003 250 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Vium6825g00003 250 SMART dpbb_1 61 146 IPR007112 -
Vium6825g00003 250 Pfam Lytic transglycolase 62 146 IPR009009 -
Vium6825g00003 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Vium6825g00003 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Vium6825g00003 250 FunFam Expansin 156 249 - -
Vium6825g00003 250 Gene3D - 13 152 IPR036908 -
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vium6825g00003 250 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vium6825g00003 250 CDD DPBB_EXPA_N 25 151 - -
Vium6825g00003 250 Gene3D - 156 250 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6825g00003 Vium-Chr6825 29554 32004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6825g00003 4 249 Expansin Gene Family AT2G03090 77.419 5.74e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6825g00003 - K20628 gmx:100799075 439.499