Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6825g00002 ATGGCCACCGTCACCACCCAAGCCTCCGCCGCCATTTTCCGGCCATGTGCCTCAAAATCTAGGTTTCTAACCGGGTCTTCCGGTAAACTGAACCGGGAAGTGAGTATGAGGCCAATGGGGTGTCCTCCTTCTGCTTCTTTCAAGGTTGAAGCCAAGAAAGGAGAGTGGTTACCAGGCTTGGCCTCCCCAGCTTACCTTAATGGCAGTCTTCCCGGTGACAACGGGTTTGACCCTCTGGGGCTTGCTGAGGACCCAGAGAACTTGAGGTGGTATGTTCAAGCTGAGCTTGTGAATGGACGCTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAACTTGGAATCATCAATGCCCCTCAATGGTATGATGCAGGGAAAGCAGAGTACTTTGCTTCATCTTCCACCCTCTTTGTGATTGAGTTCATCCTTTTCCATTATGTGGAGATCAGAAGATGGCAAGACATCAAGAACCCTGGCAGTGTCAACCAAGATCCCATCTTCAAGCAATACAGCTTGCCCGCACACGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAACGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGGAAAGGACCGTTTGAGAACCTCTTGCAGCATCTCTCTGACCCATGGCACAACACCATCATCAACACAATTCGTGGCTACTAA 759 0.5033 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVSMRPMGCPPSASFKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKLGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIRGY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6825g00002 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Vium6825g00002 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Vium6825g00002 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Vium6825g00002 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Vium6825g00002 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 17 248 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6825g00002 Vium-Chr6825 15512 16657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6825g00002 43 245 Chloroplast and Mitochondria Gene Families AT3G61470 52.358 2.48e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6825g00002 K08910 - gmx:100798548 514.998