Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6825g00001 ATGCTCGAAAATAAGGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTTCCGGAGAACCCGACGCTCCGACCATTGCCGCCGCTCACACCCCCTCGCCACCGCCGCCGGTGGATTATGTCAGAGACGCAGAAGAAGAAGGAGAAGAAGAAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGACAACAAAGACAAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCTAAATGCTGCAGACTCTAATAACACCGCAGAGGGTCTTCAGAATCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACAGTTTCTGCTACTGAAACCAACAACTCACTAGACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAATTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGCGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGTATAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTGAACCTCGCGGAGAAGAAAACGAGAAACGGGTTTCACTCCATGGAGGATCAGAGAAACAAAGATGATGACTGCTCGAGTGCATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCTAACAACAACAGTTTCCTACATCATCATCATCACCATGTTCCGTGCATCTCCACCGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTATGTGCCCTCCAGGGTTTCCCATGTCATTTTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCCCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCCACTCTCGGGAAACACTCCAGGGACGATGACTTGGCGAAGCAAGAGCACGTCCGCGAGGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCAATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAGGGGTTCCAATCAAAGAAAGAAGAGAAAAAAGACCGTGTCATTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCAAGATCCCTTAACTTTCACGAGAACTCTTGA 1452 0.4897 MLENKDPAIRLFGQKIAFSGEPDAPTIAAAHTPSPPPPVDYVRDAEEEGEEEVDDDVADSEAEDDDNKDKDPAEEVSEKTKEADLPLNAADSNNTAEGLQNPNTPSIDEESAKSKSNKSENDQTDPTTTVSATETNNSLDNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNATHLLKPNGRVLSFGIDPPICDSMASVLNLAEKKTRNGFHSMEDQRNKDDDCSSASSITVSNEESGKSTSQESLVPNNNSFLHHHHHHVPCISTVPWAYPWNSGVPSAPAMCPPGFPMSFYPHAFWNIPWFPTHHAAPAPRSPGSGPNSPTLGKHSRDDDLAKQEHVREEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKEEKKDRVIETSPVLRANPAALSRSLNFHENS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6825g00001 483 MobiDBLite consensus disorder prediction 383 403 - -
Vium6825g00001 483 ProSitePatterns Zinc finger Dof-type signature. 155 191 IPR003851 GO:0003677|GO:0006355
Vium6825g00001 483 PANTHER CYCLIC DOF FACTOR 2 4 483 IPR045174 GO:0003700|GO:0006355
Vium6825g00001 483 MobiDBLite consensus disorder prediction 121 143 - -
Vium6825g00001 483 ProSiteProfiles Zinc finger Dof-type profile. 153 207 IPR003851 GO:0003677|GO:0006355
Vium6825g00001 483 MobiDBLite consensus disorder prediction 44 71 - -
Vium6825g00001 483 Pfam Dof domain, zinc finger 150 207 IPR003851 GO:0003677|GO:0006355
Vium6825g00001 483 MobiDBLite consensus disorder prediction 367 414 - -
Vium6825g00001 483 MobiDBLite consensus disorder prediction 87 110 - -
Vium6825g00001 483 MobiDBLite consensus disorder prediction 270 309 - -
Vium6825g00001 483 MobiDBLite consensus disorder prediction 20 151 - -
Vium6825g00001 483 MobiDBLite consensus disorder prediction 282 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6825g00001 Vium-Chr6825 734 3944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6825g00001 1 481 C2C2-Dof Transcription Factor Family AT3G47500 46.386 1.42e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6825g00001 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6825g00001 - - gsj:114409713 691.419