Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6819g00001 ATGTACAAGGGTAGATTAGGAGGAAAAGCTCATCTTGGATATGTTGAAACTGACCCTTCTGGTCGATATGGTCGTTTCAGGGACATTCTTGGCAAAGGAGCAGTGAAGGTTGTGTATAGGGCATTTGATGAAGTCCTTGGAATAGAGGTTGCTTGGAACCAAGTTAACCTTGGTGATGTCTTTCATTCACCAGACCTACTTCAACGTCTTTACTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCCATCATGACCTTCCATGATTCTTGGATTGATGTCAATTATAGAACCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTAAGAGAGTACAGAAAGAAGTATCAGAGAGTAGATATCAGAGCAGTGAAGAACTGGGCACGCCAGATTCTAACTGGTTTGGAGTATTTGCATAGCCATGATCCTCCAGTGATACATAGAGACCTCAAGTGTGACAATATCTTCATCAATGGCCATCTGGGGCAGGTCAAAATTGGTGATTTGGGCCTTGCAGCCATTCTTCGTGGCTCCCAACATGCACACAGTGTCATAGGTACACCAGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAACGAGCTGGTTGACATATACTCCTTTGGGATGTGTATGATAGAAATGTTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCAGCTCAAATATACAAGAAAGTTACTTCAGGGAAGCTGCCAGAAGCCTTTTACAGAATCCATGACTTGGAAGCTCAGAAGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTGTTGTTGGACACATTTTTTGCTGAGGACCAACTAGACTCTCCACTCTCTAGCCCAACATTACCCAGAAAACAAACCCCCACACTCAATTTCACTGCACCACTGGCAAAAGGGCTACCACCAATGAGCGACCAAATAAAAGACACACACATGACCATCACAGGATCAATCAATGAAGAGGATGACACAATTTTCCTTAAAGTAAAAATTTCTAACAAAAGTGGGGAAAAGAGGAATATATTCTTTCCATTTGACACCATAAACGACACTGCAATTGATGTGGCAGTGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCATTAGAGATTGCTGAAATGATTGAGGAAGAGATATCAGCTTTAGTCCCAACATGGAGGAGGGACTGGGGCACTTCTAAGTATCAAAGACAACATAGTTTTAGCTATGAAGATGAGTATGATATGAGTAACCACCACACATACTTCTCACCGTCTTCTCGCTCTTCCTCTCATGGTTCTTCCCACAAGCATAATTCCCACCTCTGTGGGAACCATTACCCTTTTGCTCATGATTGGCCTCAGGATGAACTGTTTATGAATGATGATTCTAGCTCTCAAAGCTCAATGAACTCCTTCAAGTGCTTCAATCTCAAGTACTGTGACCCTGGCAATGAAGATGGGCATGATCCAACTGCAGTACTACGAGCAGAAGCTCTTTGCTACTCTCCAAAAGGCAACGAAAAGTGCACAAGATTCTGTCCTCGAGAAGAAGTGATGGATGCTGATTGCACCAAACAGTTTTGCAACATGAAAATGGATTCTCACAGGTATCATGGAGTCCAGAGGCTAACCAGGATTCGTTCCTTTGTGGATCTAAGGAGACAACAACTGCAACGATCACTGATGGAAGAGATTCACAAGAGGAGAATCTTCAAGACGGTTGGTGCCATTGAGAACATTGGTTTTCAAAATCCAGAGGGAGCTGCGAGTTTTTTATTTTAA 1812 0.4283 MYKGRLGGKAHLGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVNLGDVFHSPDLLQRLYSEVHLLKNLEHDSIMTFHDSWIDVNYRTFNFITELFTSGTLREYRKKYQRVDIRAVKNWARQILTGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIEMFTSEFPYSECSNPAQIYKKVTSGKLPEAFYRIHDLEAQKFVGKCLANVSERLSAKELLLDTFFAEDQLDSPLSSPTLPRKQTPTLNFTAPLAKGLPPMSDQIKDTHMTITGSINEEDDTIFLKVKISNKSGEKRNIFFPFDTINDTAIDVAVEMVKELEISDLEPLEIAEMIEEEISALVPTWRRDWGTSKYQRQHSFSYEDEYDMSNHHTYFSPSSRSSSHGSSHKHNSHLCGNHYPFAHDWPQDELFMNDDSSSQSSMNSFKCFNLKYCDPGNEDGHDPTAVLRAEALCYSPKGNEKCTRFCPREEVMDADCTKQFCNMKMDSHRYHGVQRLTRIRSFVDLRRQQLQRSLMEEIHKRRIFKTVGAIENIGFQNPEGAASFLF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6819g00001 603 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vium6819g00001 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vium6819g00001 603 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Vium6819g00001 603 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vium6819g00001 603 FunFam probable serine/threonine-protein kinase WNK9 107 287 - -
Vium6819g00001 603 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6819g00001 603 CDD STKc_WNK 22 282 - -
Vium6819g00001 603 Gene3D - 338 405 - -
Vium6819g00001 603 SUPERFAMILY Protein kinase-like (PK-like) 26 283 IPR011009 -
Vium6819g00001 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 450 - -
Vium6819g00001 603 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6819g00001 603 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6819g00001 Vium-Chr6819 54838 59874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6819g00001 12 579 MAP Kinase Kinase Kinase AT3G51630 55.517 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium6819g00001 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6819g00001 K08867 - gmx:100816187 1056.59