Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6814g00003 ATGGCACCCAGTTTTGATTGCTTTTCGAGCCTTCTCTGTGCGGAAGATAATATTATTTTTGACGAAAATGATCGGGGAGGTTTGGTGGAGGAGTTGGAGGACACGTGGGAGCATCCTATATATGATCGAAATCATAGTCAAATTGAGAACTTGGATGTCCAATATGTGTCGTTTCCATTGCCCAGTGAGGAGTGTTTGAGACTAATGATGGAAACAGAATTGCATCACTTGCCTAATGGTGATTACGTTAATAGGCTGAGGAGTGGGGATTTGGACATTGGGGCCAGAACAGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCACTTTGGTTTTGGACCTCTCTGTGCGTATTTATCTATAAATTACTTGGACCGTTTCCTCTCTGTTTATGAGTTACCAAAGCAACGAGTTTGGACAATGAAATTGTTGGTTGTAGGTTGCATATCTTTGGCAGCCAAAATGGAAGAGACTGATGTTCCTACATCTCTTGATTTGCAGGTGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATTCAGAGAATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCGATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGATCAATGATGATGAAGCTTCAATTGGAGCTTCAATTTTGCAATCCTCCGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGACGGCCAAACAGTTCAAACAGAGAAAGCAAGTTCTGATCTGATTCAGCCTGTAGAAAAGGAGAGGGTGTTGAAGTGTGTTAAAATGATCCAAGCTCTGTCATCAAACGATGGTTCTGCTAAGGATTTAATTCCTTCTGTTTCTGTCGCTAGCGTGCCTGAAAGCCCAATAAGGGTGTTGAACAATGCATGTTTCAGCTACAAAAGTGATGAACCAAATGCTGCTCTTTGTGCAAATTCTTCACATACTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 1068 0.4195 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELEDTWEHPIYDRNHSQIENLDVQYVSFPLPSEECLRLMMETELHHLPNGDYVNRLRSGDLDIGARTEAIDWIEKVREHFGFGPLCAYLSINYLDRFLSVYELPKQRVWTMKLLVVGCISLAAKMEETDVPTSLDLQVGESKYIFEAKTIQRMELLVLNTLKWRMQAITPFSFIDYFLQKINDDEASIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAISVVGDGQTVQTEKASSDLIQPVEKERVLKCVKMIQALSSNDGSAKDLIPSVSVASVPESPIRVLNNACFSYKSDEPNAALCANSSHTDTPDAKRRKLDKTFGE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6814g00003 355 SMART cyclin_7 101 189 IPR013763 -
Vium6814g00003 355 Pfam Cyclin, C-terminal domain 198 295 IPR004367 -
Vium6814g00003 355 PANTHER CYCLINS 67 290 IPR039361 -
Vium6814g00003 355 Gene3D - 67 285 - -
Vium6814g00003 355 SMART Cyclin_C_2 198 311 IPR004367 -
Vium6814g00003 355 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vium6814g00003 355 FunFam D6-type cyclin 192 284 - -
Vium6814g00003 355 FunFam D2/4-type cyclin 79 191 - -
Vium6814g00003 355 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Vium6814g00003 355 SUPERFAMILY Cyclin-like 180 288 IPR036915 -
Vium6814g00003 355 SUPERFAMILY Cyclin-like 58 195 IPR036915 -
Vium6814g00003 355 Gene3D - 79 196 - -
Vium6814g00003 355 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Vium6814g00003 355 CDD CYCLIN_AtCycD-like_rpt2 198 286 - -
Vium6814g00003 355 MobiDBLite consensus disorder prediction 340 355 - -
Vium6814g00003 355 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6814g00003 Vium-Chr6814 7240 10154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6814g00003 26 334 Core Cell Cycle Gene Families AT2G22490 46.057 1.02e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6814g00003 K18810 - gmx:100803873 540.806