Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6814g00001 ATGGCACCCAGTTTTGATTGCTTTTCGAGCCTTCTCTGTGCGGAAGATAATATTATTTTTGACGAAAATGATCGGGGAGGTTTGGTGGAGGAGTTGGAGGACACGTGGGAGCATCCTATATATGATCGAAATCATAGTCAAATTGAGAACTTGGATGTCCAATATGTGTCGTTTCCATTGCCCAGTGAGGAGTGTTTGAGACTAATGATGGAAACAGAATTGCATCACTTGCCTAATGGTGATTACGTTAATAGGCTGAGGAGTGGGGATTTGGACATTGGGGCCAGAACAGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCACTTTGGTTTTGGACCTCTCTGTGCGTATTTATCTATAAATTACTTGGACCGTTTCCTCTCTGTTTATGAGTTACCACAACGAGTTTGGACAATGAAATTGTTGGCTGTAGGTTGCATATCTTTGGCAGCCAAAATGGAAGAGACTGATGTTCCTACATCTCTTGATTTGCAGGTGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATTCAGAGAATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCGATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGATCAATGATGATGAAGCTTCAATTGGAGCTTCAATTTTGCAATCCTCCGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGACGGCCAAACAGTTCAAACAGAGAAAGCAAGTTCTGATCTGATTCAGCCTGTAGAAAAGGAGAGGGTGTTGAAGTGTGTTAAAATGATCCAAGCTCTGTCATCAAACGATGGTTCTGCTAAGGATTTAATTCCTTCTGTTTCTGTCGCTAGCGTGCCTGAAAGCCCAATAAGGGTGTTGAACAATGCATGTTTCAGCTACAAAAGTGATGAACCAAATGCTGCTCTTTGTGCAAATTCTTCACATACTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 1065 0.4207 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELEDTWEHPIYDRNHSQIENLDVQYVSFPLPSEECLRLMMETELHHLPNGDYVNRLRSGDLDIGARTEAIDWIEKVREHFGFGPLCAYLSINYLDRFLSVYELPQRVWTMKLLAVGCISLAAKMEETDVPTSLDLQVGESKYIFEAKTIQRMELLVLNTLKWRMQAITPFSFIDYFLQKINDDEASIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAISVVGDGQTVQTEKASSDLIQPVEKERVLKCVKMIQALSSNDGSAKDLIPSVSVASVPESPIRVLNNACFSYKSDEPNAALCANSSHTDTPDAKRRKLDKTFGE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6814g00001 354 Gene3D - 79 195 - -
Vium6814g00001 354 SMART cyclin_7 101 188 IPR013763 -
Vium6814g00001 354 FunFam D6-type cyclin 191 283 - -
Vium6814g00001 354 PANTHER CYCLINS 67 289 IPR039361 -
Vium6814g00001 354 CDD CYCLIN_AtCycD-like_rpt2 197 285 - -
Vium6814g00001 354 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Vium6814g00001 354 SUPERFAMILY Cyclin-like 179 287 IPR036915 -
Vium6814g00001 354 SUPERFAMILY Cyclin-like 58 194 IPR036915 -
Vium6814g00001 354 Gene3D - 67 284 - -
Vium6814g00001 354 Pfam Cyclin, C-terminal domain 197 294 IPR004367 -
Vium6814g00001 354 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vium6814g00001 354 MobiDBLite consensus disorder prediction 339 354 - -
Vium6814g00001 354 MobiDBLite consensus disorder prediction 333 354 - -
Vium6814g00001 354 FunFam D2/4-type cyclin 79 190 - -
Vium6814g00001 354 SMART Cyclin_C_2 197 310 IPR004367 -
Vium6814g00001 354 Pfam Cyclin, N-terminal domain 66 194 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6814g00001 Vium-Chr6814 3623 6531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6814g00001 26 333 Core Cell Cycle Gene Families AT2G22490 46.057 2.66e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6814g00001 K18810 - gmx:100803873 536.184