Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6812g00004 ATGGCCTCCATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCTCGCCGGAGCTCCGATATGGAGACCGATAAGTTGCAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCGCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACTATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGAAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAATTGGCTGGAGTATCACCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA 1272 0.4568 MASMPMGHHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKLQDMSATVIEGNDAVTGHIIATTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSPEMVNRLIPEHIRRQTGLSSPHSTGT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6812g00004 423 FunFam Shaggy-related protein kinase kappa 163 410 - -
Vium6812g00004 423 SUPERFAMILY Protein kinase-like (PK-like) 82 392 IPR011009 -
Vium6812g00004 423 ProSiteProfiles Protein kinase domain profile. 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00004 423 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 48 412 - -
Vium6812g00004 423 Gene3D Phosphorylase Kinase; domain 1 67 162 - -
Vium6812g00004 423 MobiDBLite consensus disorder prediction 1 46 - -
Vium6812g00004 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vium6812g00004 423 Gene3D Transferase(Phosphotransferase) domain 1 163 410 - -
Vium6812g00004 423 CDD STKc_GSK3 78 370 IPR039192 -
Vium6812g00004 423 FunFam Glycogen synthase kinase-3 beta 67 162 - -
Vium6812g00004 423 Pfam Protein kinase domain 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00004 423 SMART serkin_6 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00004 423 ProSitePatterns Protein kinases ATP-binding region signature. 89 113 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6812g00004 Vium-Chr6812 27332 32207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6812g00004 87 405 MAP Kinase Gene Family AT3G59790 35.928 2.02e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium6812g00004 Pkinase 7.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6812g00004 K14502 - gmx:100810924 776.933