Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6812g00003 ATGGCCTCCATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCTCGCCGGAGCTCCGATATGGAGACCGATAAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCGCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACTATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGAAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAATTGGCTGGAGTATCACCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA 1266 0.4566 MASMPMGHHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKDMSATVIEGNDAVTGHIIATTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSPEMVNRLIPEHIRRQTGLSSPHSTGT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6812g00003 421 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00003 421 SMART serkin_6 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00003 421 Pfam Protein kinase domain 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6812g00003 421 ProSitePatterns Protein kinases ATP-binding region signature. 87 111 IPR017441 GO:0005524
Vium6812g00003 421 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 45 410 - -
Vium6812g00003 421 FunFam Shaggy-related protein kinase kappa 161 408 - -
Vium6812g00003 421 Gene3D Transferase(Phosphotransferase) domain 1 161 408 - -
Vium6812g00003 421 SUPERFAMILY Protein kinase-like (PK-like) 80 390 IPR011009 -
Vium6812g00003 421 CDD STKc_GSK3 76 368 IPR039192 -
Vium6812g00003 421 FunFam Glycogen synthase kinase-3 beta 65 160 - -
Vium6812g00003 421 MobiDBLite consensus disorder prediction 1 45 - -
Vium6812g00003 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vium6812g00003 421 Gene3D Phosphorylase Kinase; domain 1 65 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6812g00003 Vium-Chr6812 27332 32207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6812g00003 85 403 MAP Kinase Gene Family AT3G59790 35.928 1.52e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium6812g00003 Pkinase 7.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6812g00003 K14502 - gmx:100810924 781.941