Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6807g00007 ATGGGAGACGACTCGCCAAAAAATAAAGTAAAGTTCCTCTGCAGCTACGCCGGCAAGGTCCTTCCACGACCCTCCGATGGGATTCTAAGGTACGTCGGCGGCGAGACTCGGGTGGTTTCAGTGCCTCGTGACGTGACCTTCTCCGAGTTGATGAAGAAGGTGGGGAGCATGGTGGAGGGGGAGGTGGTGCTCAAGTACCAGCTTGTCCCCGAAGATCTGGACGCGTTGGTGTCTGTTAGGACGGAGGAAGATGTGAAGCACATGATCCAGGAGCACGACCGCCACCACATAGGATTGCTCCGTGCATTCCTCTTTCCCTCTAACAAGATGTGTTTGGCTGCGTCGGAAACCTATCCATTGGAGCAACGTTACATCGACGCCGTGAATGGGATCCTGAGAACAAGCCCTAAGGCCACGACCAGGGGCTCTGCGTGTTCTTCCCCGAAATCAATCTCACCAGATGCAGGGGATCAGTACTCCCCTCGCTTTGGCAATTCGATATCCATATCCAGTGCGATGCAGATGCAGAGAGTGCGAAGCTCTCCCAGCCTCTCCAACATGGATCAGCAAGCTCATTACCACCAACATTCCCATCTCCCTTTTCACAACTATCCATCTTTCTCTACCACTAGACCCCCCCAAGATCCTCAAATAACAAGACTTGGTGGAAGGGGTGCCTCCTTCAACCACCACCACTCAAACCCCAGACAACCCCCCAGAGGACTAGGACCCTACGGCTACCCTGATGACTCTGCAACTTATGGGAATGCCCTTCATAACATCCCCAGAAGTCCCAGAAGAAAATCTATATGGGAGTAA 819 0.5311 MGDDSPKNKVKFLCSYAGKVLPRPSDGILRYVGGETRVVSVPRDVTFSELMKKVGSMVEGEVVLKYQLVPEDLDALVSVRTEEDVKHMIQEHDRHHIGLLRAFLFPSNKMCLAASETYPLEQRYIDAVNGILRTSPKATTRGSACSSPKSISPDAGDQYSPRFGNSISISSAMQMQRVRSSPSLSNMDQQAHYHQHSHLPFHNYPSFSTTRPPQDPQITRLGGRGASFNHHHSNPRQPPRGLGPYGYPDDSATYGNALHNIPRSPRRKSIWE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6807g00007 272 Pfam PB1 domain 29 106 IPR000270 GO:0005515
Vium6807g00007 272 Gene3D - 30 106 - -
Vium6807g00007 272 PANTHER OS05G0427100 PROTEIN-RELATED 4 231 - -
Vium6807g00007 272 MobiDBLite consensus disorder prediction 137 160 - -
Vium6807g00007 272 MobiDBLite consensus disorder prediction 207 272 - -
Vium6807g00007 272 SUPERFAMILY CAD & PB1 domains 25 110 - -
Vium6807g00007 272 SMART PB1_new 24 107 IPR000270 GO:0005515
Vium6807g00007 272 CDD PB1_UP2 13 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6807g00007 Vium-Chr6807 36184 38164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6807g00007 3 144 MAP Kinase Kinase Kinase AT3G46920 44.516 1.96e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6807g00007 - - vun:114186951 489.96