Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6807g00001 ATGGCCTCCGCTAGCCTCGGAACTGGTGGGGTCGGCAGTTCCAGGTCCGTTAACGCTGCCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTCGAGATGAGATTGAGAGACCACGACGAAGACAGGGATAGTGAGCCTGACATCATCGATGGTGTGGGTGCTGAGACCGGGCACGTGATAAGAACCAGTATCGGTGGCCGAAATGGTCAATCTAAGCAGAATGTCAGTTATATTGCAGAACACGTGGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAGGCAAAATGTAGAGAAACGGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTACGACATTGTTTCTTCTCAACAACTGACAAAGAAGAAGTTTACTTGAATCTTGTCCTTGAATATGTTCCTGAAACCGTGAATCGTATCGCAAGGAGCTACAGCAGGATTAACCAGCGAATGCCTTTGATATATGTAAAGCTCTATACCTACCAGATTTGCAGGGCACTTGCTTATATACATAACTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAATCCGCATACTCATCAGCTGAAACTATGTGATTTTGGTAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAACGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGACATATGGTCTACTGGTTGCGTAATGGCTGAATTACTCCTTGGACAGCCATTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACTAGGGAGGAGATAAAGTGCATGAACCCTAATTATACTGAGTTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCGTTGGAGGCTTGCATTCATCCCTTTTTTGATGAATTGAGGGACCCGAACACCCGTCTTCCTAATGAACTTTCTGGCATACCCCCTGATGTCATCAATCTTCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACTTAG 1224 0.4469 MASASLGTGGVGSSRSVNAAFRGSSSSVDWLGREMLEMRLRDHDEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNELSGIPPDVINLLIPEHARKQNLFMALHT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6807g00001 407 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6807g00001 407 CDD STKc_GSK3 77 369 IPR039192 -
Vium6807g00001 407 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 50 399 - -
Vium6807g00001 407 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6807g00001 407 FunFam Glycogen synthase kinase-3 beta 66 161 - -
Vium6807g00001 407 FunFam Shaggy-related protein kinase kappa 162 403 - -
Vium6807g00001 407 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Vium6807g00001 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vium6807g00001 407 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Vium6807g00001 407 SUPERFAMILY Protein kinase-like (PK-like) 81 380 IPR011009 -
Vium6807g00001 407 Gene3D Transferase(Phosphotransferase) domain 1 162 396 - -
Vium6807g00001 407 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6807g00001 Vium-Chr6807 25119 30772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6807g00001 88 374 Core Cell Cycle Gene Families AT1G76540 35.254 2.76e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium6807g00001 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6807g00001 K03083 - gmx:100799387 816.609