Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6800g00013 ATGGGTAAGGGAGGAATGTCAATTGATGATAATGGAGAAGACAAAGAGCAGAATATGGCTGCTTGGCTTCTGGGTATAAACAATCTCAAGATTCAACCTTTCGAGCTTCCTATTCTAGGACCCCATGATGTCAGAGTTAGAATGAAAGCTGTTGGGATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAGGTGTGCACACTTCATAGTTAAGGAACCAATGGTAATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTGAGGTAAACAATTTGGTGCCTGGTGACCGTGTGGCGCTTGAACCTGGGATCAGTTGCTGGCGATGCGGCCACTGCAAACAGGGTCGATATAATTTGTGTGATGAAATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCTGCAGACCTATGTTTTAAGCTTCCAGACAACGTGAGCCTAGAGGAGGGGGCCATGTGTGAACCCTTAAGTGTTGGTATTCATGCTTGTAGGAGAGCTAATATTGGACCAGAAACCAATGTGTTGATCATGGGAGCTGGACCCATAGGACTTGTTACACTGCTTGCAGCTCGTGCTTTCGGAGCACCCAAGACTGTCATTGTTGATGTTGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGACATTGTTAAAGTCTCAACAAACATTCAGGATGTTGCTGAAGAAGTTGAGCTGATACAAAAGGTTATGGGAGCTTCTATAAATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCATTGGGTGCTACTCAGCCTGGTGGCAAAGTTTGCCTAGTGGGAATGGGACATTCTGAAATGACTGTCCCACTCACCCCTGCAGCAGCAAGGGAAGTTGATGTGATTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGTCTTGAGTTTCTAAGGAGTGGGAAAATCGATGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAAGTGGAAGAAGCTTTTGAAACAAGTGCTCGTGGTGGTACTGCCATCAAGGTCATGTTCAATCTTTAG 1095 0.4447 MGKGGMSIDDNGEDKEQNMAAWLLGINNLKIQPFELPILGPHDVRVRMKAVGICGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGSEVNNLVPGDRVALEPGISCWRCGHCKQGRYNLCDEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGIHACRRANIGPETNVLIMGAGPIGLVTLLAARAFGAPKTVIVDVDDYRLSVAKSLGADDIVKVSTNIQDVAEEVELIQKVMGASINVTFDCAGFDKTMSTALGATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6800g00013 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Vium6800g00013 364 Gene3D - 169 309 - -
Vium6800g00013 364 PANTHER SORBITOL DEHYDROGENASE 17 364 - -
Vium6800g00013 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Vium6800g00013 364 SMART PKS_ER_names_mod 25 362 IPR020843 GO:0016491
Vium6800g00013 364 Gene3D - 29 350 - -
Vium6800g00013 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Vium6800g00013 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Vium6800g00013 364 FunFam Sorbitol dehydrogenase 169 309 - -
Vium6800g00013 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Vium6800g00013 364 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6800g00013 Vium-Chr6800 69712 73657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6800g00013 31 297 Monolignol Biosynthesis Gene Families AT4G37980 26.259 2.51e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6800g00013 K00008 - gmx:100791559 699.508