Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6800g00010 ATGGACGTGGATGGGGGCACCAAGCGTGTGTACAACCGTCTCGGCGGGGACGGGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCGTGCCCTTTTCTGCACAGCGAATTGCCCGCATCTTCCCACTCCAACGGGGCCTCCTCGAAGCGTGCGTACGACAATTCGGGCTTATCGGGATTCTCGGGCCAGCGCGGACGCCCCAATTTCAACAACACGTGGGGCCGTGGCGGGGGGCGCGGAGGCGGCGGCGGTAGAGGGGTGGTGGTCAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAATTCCTTCACTCTTGGAAAGTGGGAGACGGGTTTTCTTTGCTGACACAGCTCGAAGGGCATCAGAAGGCTGTGAGCGCAATCGCTTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGACGAGACGGCAAGGATTTGGGACTGCCAGTCTGGAAAGTGTGTAGGTGTGATCAATCTCGGTGGTGAAGTTGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTCTGTCAAGGCCTGGAACACTCAAAATTTAATGGAGCTAAGTCTAAGTGGCCCAGTCGGACAAGTTTATGCTCTTGTTGTAAACAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGGTAACAACTGCTTCGAGCCAGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCACTAGTTGTTGGTGCTAATAGACTTTACTCTGGGTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAATGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAATTCCTTTTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACATATACTCACAATGAGGAACATGGCATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAGCCCATTTTGTTGTGTGCTTGCAATGATAACACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCGATGCAGATAGGGCCTAACGGCATATTCTTCACCGGAGACGGTACTGGTGAAGTAAGAGTGTGGAATTGGTCAGCGGAGACAACCGCTACCGTCCAATAA 1275 0.491 MDVDGGTKRVYNRLGGDGKHQKVCFHWQAGKCNRYPCPFLHSELPASSHSNGASSKRAYDNSGLSGFSGQRGRPNFNNTWGRGGGRGGGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWKVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNSVKAWNTQNLMELSLSGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVGNNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAMQIGPNGIFFTGDGTGEVRVWNWSAETTATVQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6800g00010 424 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Vium6800g00010 424 PANTHER - 98 420 IPR044715 -
Vium6800g00010 424 FunFam Zinc finger CCCH domain-containing protein 48 214 422 - -
Vium6800g00010 424 Pfam Zinc finger domain 102 120 - -
Vium6800g00010 424 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Vium6800g00010 424 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Vium6800g00010 424 SMART WD40_4 250 287 IPR001680 GO:0005515
Vium6800g00010 424 SMART WD40_4 206 243 IPR001680 GO:0005515
Vium6800g00010 424 SMART WD40_4 127 166 IPR001680 GO:0005515
Vium6800g00010 424 SMART WD40_4 290 327 IPR001680 GO:0005515
Vium6800g00010 424 SMART WD40_4 377 414 IPR001680 GO:0005515
Vium6800g00010 424 SMART WD40_4 331 374 IPR001680 GO:0005515
Vium6800g00010 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Vium6800g00010 424 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Vium6800g00010 424 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Vium6800g00010 424 SUPERFAMILY WD40 repeat-like 128 416 IPR036322 GO:0005515
Vium6800g00010 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Vium6800g00010 424 MobiDBLite consensus disorder prediction 63 89 - -
Vium6800g00010 424 FunFam Zinc finger CCCH domain-containing protein 48 122 212 - -
Vium6800g00010 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Vium6800g00010 424 MobiDBLite consensus disorder prediction 63 77 - -
Vium6800g00010 424 Gene3D - 214 424 IPR015943 GO:0005515
Vium6800g00010 424 Pfam WD domain, G-beta repeat 130 166 IPR001680 GO:0005515
Vium6800g00010 424 Pfam WD domain, G-beta repeat 253 287 IPR001680 GO:0005515
Vium6800g00010 424 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Vium6800g00010 424 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Vium6800g00010 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Vium6800g00010 424 Gene3D - 113 213 IPR015943 GO:0005515
Vium6800g00010 424 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Vium6800g00010 424 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Vium6800g00010 424 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6800g00010 Vium-Chr6800 53245 66600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6800g00010 229 419 Miscellaneous Gene Families AT5G08390 26.500 6.74e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium6800g00010 WD40 8.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6800g00010 - - gmx:100775542 802.357