Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6800g00009 ATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTTGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCTGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGACAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACATGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTTGGTGAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCACATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATTAGCTTTGGCGCCGGCTCTCCTACTTGTGATGCTCAATCCCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACGCCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCAATTCCCTCGATGCTTAGCTTTTCATTCCTCAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGAAGCTAGCTTGGGAAAGTTACTTTTGCTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACGAATCGCAAGCCTGCTGACGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAA 1461 0.4353 MAVAKSDSNSEPCTSYNCYKVAALTETILETSQVSNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKHEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIKGMLCTDPSRRLTAQEVLDHCWMESNQTNQEQLGENQIQSCKQWDVGGSTFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCVLSAGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVDAIAGEASLGKLLLLQDSHLCIEHDAKETNRKPADAKRSIGMNGHKVLGIHSKRNRTIGLGECEQLDFVVTESVIRWSSCTQLPTSLRSSLVC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6800g00009 486 Gene3D Transferase(Phosphotransferase) domain 1 127 195 - -
Vium6800g00009 486 Pfam Protein kinase domain 41 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00009 486 Pfam Protein kinase domain 196 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00009 486 Gene3D Transferase(Phosphotransferase) domain 1 196 302 - -
Vium6800g00009 486 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Vium6800g00009 486 CDD STKc_CAMK 40 266 - -
Vium6800g00009 486 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 298 - -
Vium6800g00009 486 Gene3D Phosphorylase Kinase; domain 1 42 126 - -
Vium6800g00009 486 ProSiteProfiles Protein kinase domain profile. 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6800g00009 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vium6800g00009 486 FunFam Calcium-dependent protein kinase 1 43 126 - -
Vium6800g00009 486 SUPERFAMILY Protein kinase-like (PK-like) 38 333 IPR011009 -
Vium6800g00009 486 SMART serkin_6 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6800g00009 Vium-Chr6800 43153 46530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6800g00009 28 290 EF-hand Containing Proteins AT3G57530 42.905 1.06e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium6800g00009 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6800g00009 - - pvu:PHAVU_004G122500g 904.82